AT4G32820.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); Has 166 Blast hits to 153 proteins in 63 species: Archae - 8; Bacteria - 13; Metazoa - 66; Fungi - 5; Plants - 51; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:15831679..15841454 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 210752.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.92 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||
| Length | 1863 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MFSIAAINDT ESTEKWEPLA PSKEAQEFHL SQTYHDGLLK LQAKDYDKAR ELLESILKDP IITNSKVETI ANDNHLHHLR FLALKNLATV FLELGSSHYE 0101: NALNCYLQAI DLDAKDSVLW NHLGTLSCSM GLLSISRWAF EQGLLCSPNN WNCMEKLLEV LIAVGDEVSC LSVANLILRH WPSHSRALHV KHCIEDTDSA 0201: PFAPKGIDKL EPQHVRLKFL GKRKVSDMNQ DMDATSKKLR KRVQFKLPEA SWVALLNILI GIVHPSRETV GISADIPITI ELSLSTEAVM QGMKKKDHCV 0301: DSDSSNVSVK DCNIERESGG SVKEKEPVFS EEHPQERRST RLERLRNQKP EKEGLEFDNS KDPSSDILQY LEKFVLKRGF DRESAGSFCN EESDPISEHA 0401: VVSNFVKENL ENYGAYHMGH LLLEYIANKC EHVLSRETAL KILELEKLTR HWGRDRKPEC SLFLAELYHD FDSKRSDIPD APSCMVEVTY HLSKIIESVS 0501: LDYAIDSTPS SRGKMFSDSS FKSFQGDEAA KEVLDYDTRS FWARYFWLSA RLSILEDNKA KALEEYLRCL SLLGREGIGE APVLIQRPHC RRVRELTINR 0601: IIHEINLLKI DFLLENNIPE MMEKEFYSEC VNLLAPLLFP DKDILPAYAV KTEEGISSVE LSALEVLIKA CQKSKPIDVE VYMNCHRRKL QVLLDSTGTG 0701: ESVVTPKTSS KNSSESWDHL VAEEVKAILL CISQVKNSLD QSGNSDDMVA PRDCVAGIQA LLLRVMSNIV RHFFSKRYSD SQNADGIEEE KKSCFLDAAI 0801: GFCKLQHLDA TISTKYQVEL IIRLHDLLAE YGLCCAGKNC AGEEGAFLRF AIKHLLAVDM KVKSSINSPD GLGHDMGLPD KLCRNEVKSF LEEVHVEKNE 0901: NNKTESKKDG SEEQVGYREK EQSEQQSKQI PEHTEEVAEE EKDELELLIN NALDQCFFCL YGLNLRVDGS YEDELAVHKN TSRGDYQTKE QCVDVFQYIL 1001: PYAKASSRTG LVKLRRVLRA IKKHFSQPPD DLLIGNVIDK FLDDPELCED KLSYEAGSEG FLETITKCLI PSRTLSEYKI SLLHSSDPYL DVYRNLYFLL 1101: AQSEEVSASD KWPGFVLTKE GEEFEQQNTN LFKYDLLYNP LRFESWEKLG NIYDEEVDLL LNDGSKHINV VGWRKNSALS QRVETSRRRS RRCLLMSLAL 1201: ANSPDQQSEI HELLALVYYD SLQSVVPFYD QRSVLPSKDA TWTRFCENSM KHFNKAFSHR QDWSHAFYMG KLSEKLGHSY EISLSYYKQA MTLNPSAVDP 1301: VYRMHASRLK LLNACGKQNL EALKVLASYC FDESIKDTAM TIIGTTTFGS SRTLEEAQDG NLEACYAKSG EGSIQMEGVW HMLYNDSLSA LGICVEGDLK 1401: HFHKARYMLA QGLYRRGGSS DLQRAKEELS FCFKSSRSSF TINMWEIDGM VKKGRRKTPG LAGNKKALEV NLPESSRKFI TCIRKYLLFY LRLLEETEDV 1501: NTLERAFNSL RSDKRFSLCV EDLVPVAIGR YVKALVSSMS RVESAGAIIN PDSQLEKIFS LFIEQGSIWP DICNFPETRG PETSESSLYR YLHQYIVSLE 1601: LDNKVETLET INEKIRKRFK NPKLSNSFSA KVGRHASLAW CRALIISLAL ITPLQPVSSE ESQAITPSFG LLENRRVLCV DLQSEFWSSS FEDPLESQML 1701: EAKWRPVLSK IKNVLIFNKV VEGNLEIANS LLKSCYNFFR ETASVTLPSD INLYFALPRL APAGELLPGN EGVEVIDVSI PRKLLLWAYT LFHGHCGSIS 1801: QVVKYMEENT KPKMKRGAST SSVVPSVQSG GTSEPEPAPK VVQVIIPDSL GGDSCGSTPA APL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)