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AT2G26030.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.524
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box/RNI-like/FBD-like domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G44950.1); Has 2057 Blast hits to 2017 proteins in 27 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 2053; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:2496eggNOG:ENOG410IXYPeggNOG:ENOG410ZUW1EMBL:AC004747
EMBL:AK176562EMBL:AY144457EMBL:AY649316EMBL:CP002685
EnsemblPlants:AT2G26030EnsemblPlants:AT2G26030.1EnsemblPlants:AT2G26030.3entrez:817144
ExpressionAtlas:Q8H1M0Gene3D:3.80.10.10GeneID:817144hmmpanther:PTHR32212
hmmpanther:PTHR32212:SF126HOGENOM:HOG000015216InParanoid:Q8H1M0InterPro:IPR001810
InterPro:IPR006566InterPro:IPR013101InterPro:IPR032675KEGG:ath:AT2G26030
OMA:ELIMGEEPaxDb:Q8H1M0Pfam:PF00646Pfam:PF07723
Pfam:PF08387Pfam:Q8H1M0Pfscan:PS50181PhylomeDB:Q8H1M0
PIR:T02620PRIDE:Q8H1M0PRO:PR:Q8H1M0PROSITE:PS50181
ProteinModelPortal:Q8H1M0Proteomes:UP000006548RefSeq:NP_001031420.1RefSeq:NP_180173.1
SMART:SM00256SMART:SM00579SMR:Q8H1M0STRING:3702.AT2G26030.1
SUPFAM:SSF52047SUPFAM:SSF81383TAIR:AT2G26030UniGene:At.38945
UniProt:Q8H1M0
Coordinates (TAIR10) chr2:-:11091505..11093000
Molecular Weight (calculated) 51456.50 Da
IEP (calculated) 4.75
GRAVY (calculated) -0.01
Length 442 amino acids
Sequence (TAIR10)
(BLAST)
001: MNCDRICELP DSLLTQVLSY LPTIDSVKTS VLSKRWEFLW LRVPVLDLKV SDFPDENYAS FIDNFLEFNR KSRMRKFKLK YDEYTYDDDR LAGWVVTTVD
101: RGIQHLDAKG FETNMCVREF MPQNIYKCNT LVSLMLVTVG IENPEFVVSL PSLKIMHLED VWYYDDPLIM EKIISGCPVL EDFVLIRPID FCNLDVLQFL
201: RVRSLSLRSF RLTFEYSVSC TYFSVEIDAP RLEYLNFNDD QSDTIVVKNM TSLSMIDIDS EFNVKFGGSR LEPGDLRKRD IIRDFLTAIS CVRHMIISRR
301: TLEVLDRYSK LVPIPKFDNL YRLQAAVSRS MLQLLLVFLE SCPNLENLIL DFTVSTEPEQ DGLTYVPQCL LSSLECVEIR ELIMGEETGE KLVRYFLKNS
401: VVLKKLILRL EDSSIANQDS DIFKELSTFT KRSRSCEVII IH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)