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AT2G36660.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : poly(A) binding protein 7
Curator
Summary (TAIR10)
polyadenylate-binding protein, putative / PABP, putative. Member of the class III family of PABP proteins.
Computational
Description (TAIR10)
poly(A) binding protein 7 (PAB7); CONTAINS InterPro DOMAIN/s: Polyadenylate-binding protein/Hyperplastic disc protein (InterPro:IPR002004), RNA recognition motif, RNP-1 (InterPro:IPR000504), Polyadenylate binding protein, human types 1, 2, 3, 4 (InterPro:IPR006515), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: poly(A) binding protein 2 (TAIR:AT4G34110.1); Has 517049 Blast hits to 488607 proteins in 21541 species: Archae - 10464; Bacteria - 293370; Metazoa - 110143; Fungi - 18083; Plants - 34749; Viruses - 34404; Other Eukaryotes - 15836 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XR5XeggNOG:KOG0123EMBL:AC006282EMBL:BX819570
EMBL:CP002685EnsemblPlants:AT2G36660EnsemblPlants:AT2G36660.1entrez:818238
Gene3D:1.10.1900.10Gene3D:3.30.70.330GeneID:818238Genevisible:Q9ZQA8
GO:GO:0000166GO:GO:0003723GO:GO:0005634GO:GO:0005737
GO:GO:0006417Gramene:AT2G36660.1hmmpanther:PTHR24012hmmpanther:PTHR24012:SF455
HOGENOM:HOG000217922InParanoid:Q9ZQA8InterPro:IPR000504InterPro:IPR002004
InterPro:IPR003954InterPro:IPR006515InterPro:IPR012677KEGG:ath:AT2G36660
KO:K13126ncoils:CoilOMA:RERFNEFPaxDb:Q9ZQA8
Pfam:PF00076Pfam:PF00658Pfam:Q9ZQA8Pfscan:PS50102
Pfscan:PS51309PhylomeDB:Q9ZQA8PIR:B84783PRIDE:Q9ZQA8
PRO:PR:Q9ZQA8PROSITE:PS50102PROSITE:PS51309ProteinModelPortal:Q9ZQA8
Proteomes:UP000006548RefSeq:NP_181204.1SMART:SM00360SMART:SM00361
SMART:SM00517SMR:Q9ZQA8STRING:3702.AT2G36660.1SUPFAM:SSF54928
SUPFAM:SSF63570TAIR:AT2G36660tair10-symbols:PAB7TIGRfam:TIGR01628
TIGRFAMs:TIGR01628UniGene:At.37531UniGene:At.50119UniProt:Q9ZQA8
Coordinates (TAIR10) chr2:-:15361476..15364398
Molecular Weight (calculated) 67921.30 Da
IEP (calculated) 9.54
GRAVY (calculated) -0.45
Length 609 amino acids
Sequence (TAIR10)
(BLAST)
001: MATVHAALHA ADASSSGSSS PVTASLYVGD LHPSVTEGIL YDAFAEFKSL TSVRLCKDAS SGRSLCYGYA NFLSRQDANL AIEKKNNSLL NGKMIRVMWS
101: VRAPDARRNG VGNVFVKNLP ESVTNAVLQD MFKKFGNIVS CKVATLEDGK SRGYGFVQFE QEDAAHAAIQ TLNSTIVADK EIYVGKFMKK TDRVKPEEKY
201: TNLYMKNLDA DVSEDLLREK FAEFGKIVSL AIAKDENRLC RGYAFVNFDN PEDARRAAET VNGTKFGSKC LYVGRAQKKA EREQLLREQF KEKHEEQKMI
301: AKVSNIYVKN VNVAVTEEEL RKHFSQCGTI TSTKLMCDEK GKSKGFGFVC FSTPEEAIDA VKTFHGQMFH GKPLYVAIAQ KKEDRKMQLQ VQFGNRVEAR
401: KSSSSASVNP GTYAPLYYTN THPGMVYQSY PLMWKSANMI GSSYPNSEAV TYPPMVANAP SKNRQNRIGK LDRNAVSYVP NVYQSTQMLP LSRDFSKQQH
501: SRTYGRGKEM KKSIQQRQSE TVGMEMQLLG ELLHPLVEKL EPQLANKITG MLLEMDKSEL LLLLKSPEDL AVRVDEAFEV LKSSKTNLTA PNTHRSDYLA
601: SGIAGVSIK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)