AT4G34400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : AP2/B3-like transcriptional factor family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT3G06160.2); Has 17257 Blast hits to 10862 proteins in 685 species: Archae - 48; Bacteria - 3184; Metazoa - 5526; Fungi - 2028; Plants - 1203; Viruses - 203; Other Eukaryotes - 5065 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:16445323..16447596 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45680.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.78 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.79 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 397 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASSMASNDF QLPPRFFTVF VSHFSSEFMV IPVSYYDHIP HRFPKTVILR GPGGCSWKVA TEIKDDEVLF SQGWPKFVRD NTLNDGDFLT FAYNGAHIFE 101: VSIFRGYDAC KEISEVTELE EEEEDSVISL SSEDTDTGAK SEMKNTVPEG RDKGKSKVEV VEDSDDDEEE DSVYSESSEE TETDTDSEFK VAKPTIPKSQ 201: KKGKKKEQVV ESSDDEEDEE EDSDSDYIET FGQLDIEENS ISEEDSSYAP DKEDTATASF VKPKVANKVA NLKRKEAAKK RKKVDPMIKN PERYLDDPKN 301: IHFETNVKNR LYELLVHAQL VKDYCLRFGD YVNYIDRFGK LSAKTAKWKD QRVCIKRWMR ICKRNKLKKE DRILCELLRK GTFVYAIKLH VIRGKDL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)