AT1G02190.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Fatty acid hydroxylase superfamily | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Fatty acid hydroxylase superfamily; FUNCTIONS IN: oxidoreductase activity, iron ion binding, catalytic activity; INVOLVED IN: oxidation reduction, fatty acid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694), Uncharacterised protein, Wax2 C-terminal (InterPro:IPR021940); BEST Arabidopsis thaliana protein match is: Fatty acid hydroxylase superfamily (TAIR:AT2G37700.1); Has 2538 Blast hits to 2531 proteins in 532 species: Archae - 0; Bacteria - 866; Metazoa - 257; Fungi - 377; Plants - 504; Viruses - 3; Other Eukaryotes - 531 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:415154..417796 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72096.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.73 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||
| Length | 627 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASRPGALTE WPWSPLGSFK YLLVAPLVMA SMHSYVTAVD EEKDLSRLMI VVLMLWRIVH SQIWISVSRQ RTAKGTNKIV DKPIEFEQVD RERTWDDQVI 101: FNTLLMYLAN IKLPGASHLP PWRLDGAILM ALLHAGPVEF LYYWFHRALH HHFLYSRYHS HHHSSIVTEP ITSVVHPFAE HIAYTLLFAI PMVTASLCGI 201: LSIVSIMGYI TYIDFMNNMG HCNFELFPKR LFHLFPPLKF LCYTPSFHSL HHTQFRTNYS LFMPIYDFIY GTTDNLTDSL YERSLEIEEE SPDVIHLTHL 301: TTHNSIYQMR LGFPSLSSCP LWSRPPWYLT CFMWPFTLLC SFALTSAIPL RTFVFERNRL RDLTVHSHLL PKFSFHYKSQ RHHESINTII EEAILEADEK 401: GVKVMSLGLM NNREELNGSG EMYVQKYPKL KIRLVDGSSM AATVVINNIP KEATEIVFRG NLTKVASAVV FALCQKGVKV VVLREEEHSK LIKSGVDKNL 501: VLSTSNSYYS PKVWLVGDGI ENEEQMKAKE GTLFVPFSHF PPNKLRKDCF YQSTPAMRVP KSAQNIDSCE NWLGRRVMSA WKIGGIVHAL EGWEEHDCGN 601: TCNVLRLHAI WEAALRHDFQ PLPPSPL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)