AT1G58430.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 0.998 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : GDSL-like Lipase/Acylhydrolase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes an anther-specific proline-rich protein. | ||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
RXF26; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase family protein (TAIR:AT2G24560.1); Has 3551 Blast hits to 3513 proteins in 245 species: Archae - 0; Bacteria - 416; Metazoa - 0; Fungi - 15; Plants - 3100; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:21711684..21712992 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 40404.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.86 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 360 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MWTSKTISFT LFITTTLLGS CNASAKAKTQ PLFPAILIFG DSTVDTGNNN YPSQTIFRAK HVPYGIDLPN HSPNGRFSNG KIFSDIIATK LNIKQFVPPF 101: LQPNLTDQEI VTGVCFASAG AGYDDQTSLT TQAIRVSEQP NMFKSYIARL KSIVGDKKAM KIINNALVVV SAGPNDFILN YYEVPSWRRM YPSISDYQDF 201: VLSRLNNFVK ELYSLGCRKI LVGGLPPMGC LPIQMTAQFR NVLRFCLEQE NRDSVLYNQK LQKLLPQTQA SLTGSKILYS DVYDPMMEML QNPSKYGFKE 301: TTRGCCGTGF LETSFMCNAY SSMCQNRSEF LFFDSIHPSE ATYNYIGNVL DTKIRGWLKA |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)