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AT5G07230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT5G62080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JWFCeggNOG:ENOG41104ZEEMBL:AK175994EMBL:AL163652
EMBL:BT024638EMBL:CP002688EMBL:X61750EnsemblPlants:AT5G07230
EnsemblPlants:AT5G07230.1entrez:830614GeneID:830614Genevisible:Q00762
GO:GO:0005576Gramene:AT5G07230.1hmmpanther:PTHR35501hmmpanther:PTHR35501:SF2
HOGENOM:HOG000243255InParanoid:Q00762InterPro:IPR016140KEGG:ath:AT5G07230
OMA:FDCGISAPaxDb:Q00762Pfam:Q00762PhylomeDB:Q00762
PIR:S22466PIR:T48494PRIDE:Q00762PRO:PR:Q00762
ProteinModelPortal:Q00762Proteomes:UP000006548RefSeq:NP_196340.1SMART:SM00499
STRING:3702.AT5G07230.1SUPFAM:SSF47699TAIR:AT5G07230UniGene:At.32747
UniProt:Q00762
Coordinates (TAIR10) chr5:+:2271013..2271408
Molecular Weight (calculated) 9283.41 Da
IEP (calculated) 6.08
GRAVY (calculated) 0.67
Length 91 amino acids
Sequence (TAIR10)
(BLAST)
1: MVSLKSLAAI LVAMFLATGP TVLAQQCRDE LSNVQVCAPL LLPGAVNPAA NSNCCAALQA TNKDCLCNAL RAATTLTSLC NLPSFDCGIS A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)