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AT4G19130.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Replication factor-A protein 1-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Replication factor-A protein 1-related; FUNCTIONS IN: DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: DNA replication; LOCATED IN: nucleus; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Replication factor-a protein 1 Rpa1 (InterPro:IPR004591), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Replication factor A, C-terminal (InterPro:IPR013955), Zinc finger, CCHC-type (InterPro:IPR001878), Replication factor-A protein 1, N-terminal (InterPro:IPR007199); BEST Arabidopsis thaliana protein match is: Replication factor-A protein 1-related (TAIR:AT5G45400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1599eggNOG:KOG0851EMBL:AF439837EMBL:AL021687
EMBL:AL161550EMBL:CP002687EnsemblPlants:AT4G19130EnsemblPlants:AT4G19130.1
entrez:827651Gene3D:2.40.50.140GeneID:827651Genevisible:F4JSG3
GO:GO:0003677GO:GO:0005634GO:GO:0006260GO:GO:0006281
GO:GO:0006310GO:GO:0008270Gramene:AT4G19130.1hmmpanther:PTHR23273
hmmpanther:PTHR23273:SF12InParanoid:F4JSG3InterPro:IPR001878InterPro:IPR004365
InterPro:IPR004591InterPro:IPR007199InterPro:IPR012340InterPro:IPR013955
InterPro:IPR031657iPTMnet:F4JSG3KEGG:ath:AT4G19130KO:K07466
OMA:CDVEGQQPaxDb:F4JSG3Pfam:F4JSG3Pfam:PF01336
Pfam:PF04057Pfam:PF08646Pfam:PF16900Pfscan:PS50158
PIR:T04434PRIDE:F4JSG3PRO:PR:F4JSG3PROSITE:PS50158
ProteinModelPortal:F4JSG3Proteomes:UP000006548RefSeq:NP_567576.2SMR:F4JSG3
STRING:3702.AT4G19130.1SUPFAM:SSF50249TAIR:AT4G19130TIGRfam:TIGR00617
TIGRFAMs:TIGR00617UniGene:At.26624UniGene:At.73929UniProt:F4JSG3
Coordinates (TAIR10) chr4:-:10466618..10469092
Molecular Weight (calculated) 85996.50 Da
IEP (calculated) 7.76
GRAVY (calculated) -0.52
Length 784 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVSLTAGAI GKIMNGEVTT EADMIPVLQV TDLKQIMAQQ DPTRERFRMV LSDGTYLHQG MLGTDLNNLV KEGTLQPGSI VRLTRFVGDV IKGRRIVIVP
101: QLEVLKQISD IIGHPVPGGK HNDQRGADSG IKFNTTEQQG SGIRQVNNIE PGRSNAAISP QVGGTGSSVP ASTTPSTRAY SNPSSGNGVT RQDYARDPPT
201: SYPHQPQPPP PMYANRGPVA RNEAPPKIIP VNALSPYSGR WTIKARVTNK AALKQYSNPR GEGKVFNFDL LDADGGEIRV TCFNAVADQF YDQIVVGNLY
301: LISRGSLRPA QKNFNHLRND YEIMLDNAST IKQCYEEDAA IPRHQFHFRT IGDIESMENN CIVDVIGIVS SISPTVTITR KNGTATPKRS LQLKDMSGRS
401: VEVTMWGDFC NAEGQRLQSL CDSGVFPVLA VKAGRISEFN GKTVSTIGSS QLFIDPDFVE AEKLKNWFER EGKSVPCISL SREFSGSGKV DVRKTISQIK
501: DEKLGTSEKP DWITVSATIL YLKFDNFCYT ACPIMNGDRP CSKKVTDNGD GTWRCEKCDK SVDECDYRYI LQLQIQDHTD LTCVTAFQEA GEEIMGISAK
601: DLYYVKNEHK DEEKFEDIIR KVAFTKYNFK LKVKEETFSD EQRVKATVVK VDKLNYSADT RTMLGAMDKL RTRDANSLPI NPEGSDYNAD VVNTGIGSSG
701: TRDPSSVQRR DFGLHAHQSG QSGNHYSGGG ATTSCNVCGN SGHVSAKCPG ATKPQEQGQY MGGSYRGTTG SYGGGLPRQH VGSY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)