AT5G45400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Replication factor-A protein 1-related | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RPA70C; FUNCTIONS IN: DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: DNA replication; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Replication factor A, C-terminal (InterPro:IPR013955), Replication factor-a protein 1 Rpa1 (InterPro:IPR004591), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Zinc finger, CCHC-type (InterPro:IPR001878), Replication factor-A protein 1, N-terminal (InterPro:IPR007199); BEST Arabidopsis thaliana protein match is: Replication factor-A protein 1-related (TAIR:AT4G19130.1); Has 1172 Blast hits to 939 proteins in 244 species: Archae - 33; Bacteria - 8; Metazoa - 314; Fungi - 240; Plants - 399; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:18398990..18401644 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 94398.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.72 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 853 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAVSLTEGVV MKMLNGEVTS ETDMMPVLQV TELKLIQSKL HQNQESSNRY KFLLSDGTDL AAGMLNTSLN SLVNQGTIQL GSVIRLTHYI CNLIQTRRIV 101: VIMQLEVIVE KCNIIGNPKE PGHSSINPQR GGVNTQSNGG SEQQQARRSD VNGGRYGVSA NSPQPQVVHN SSDAGRYCVS ANSPQPQVVH SSSDAGRYGV 201: SANSPQRQVV HNSPDAGRYG QPQVSQRYGT GSGYPETSPS TRPYVSSNAG YGGSRQDQPR APTATTAYSR PVQSAYQPQQ PPMYVNRGPV ARNEAPPRIN 301: PIAALNPYQG RWTIKVRVTS KADLRRFNNP RGEGKLFSFD LLDADGGEIR VTCFNDAVDQ FFDKIVVGNV YLISRGNLKP AQKNFNHLPN DYEIHLDSAS 401: TIQPCEDDGT IPRYHFHFRN IGDIENMENN STTDVIGIVS SISPTVAIMR KNLTEVQKRS LQLKDMSGRS VEVTMWGNFC NAEGQKLQNL CDSGVFPVLA 501: LKAGRIGEFN GKQVSTIGAS QFFIEPDFPE ARELRQWYER EGRNAHFTSI SREFSGVGRQ EVRKVIAQIK DEKLGTSEKP DWITVCATIS FMKVENFCYT 601: ACPIMNGDRP CSKKVTNNGD GTWRCEKCDK CVDECDYRYI LQIQLQDHTD LTWATAFQEA GEEIMGMSAK DLYYVKYENQ DEEKFEDIIR SVAFTKYIFK 701: LKIKEETYSD EQRVKATVVK AEKLNYSSNT RFMLEAIDKL KIGDANSLPI KAESSNYRSD AFNSGVGTSG TRDTASVDAR REFGLPAANQ VGQYGNQYSS 801: DARSLGGFTS CNVCRSNSHV SANCPTLMSE PQGQYMGGTN AGGGMPRQHV GSY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)