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AT4G00310.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.969
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Putative membrane lipoprotein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
EMBRYO SAC DEVELOPMENT ARREST 8 (EDA8); Has 49 Blast hits to 49 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 8; Plants - 36; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JRZ1eggNOG:ENOG4111C7FEMBL:AF013293EMBL:AF195115
EMBL:AK317127EMBL:AL161471EMBL:AY049241EMBL:AY090270
EMBL:CP002687EnsemblPlants:AT4G00310EnsemblPlants:AT4G00310.1EnsemblPlants:AT4G00310.2
entrez:827417GeneID:827417GO:GO:0009561GO:GO:0009793
Gramene:AT4G00310.1Gramene:AT4G00310.2hmmpanther:PTHR34680HOGENOM:HOG000091025
KEGG:ath:AT4G00310OMA:WGRKRGGPfscan:PS51257PhylomeDB:O23071
PIR:T01540Proteomes:UP000006548RefSeq:NP_001031563.1RefSeq:NP_567168.1
STRING:3702.AT4G00310.1TAIR:AT4G00310tair10-symbols:EDA8tair10-symbols:MEE46
UniGene:At.3746UniProt:O23071
Coordinates (TAIR10) chr4:+:133857..135235
Molecular Weight (calculated) 33188.50 Da
IEP (calculated) 5.82
GRAVY (calculated) -0.85
Length 302 amino acids
Sequence (TAIR10)
(BLAST)
001: MRIRKNTKLS SVLLSTAGCG GERPDTYVCH LNQSPWDVIP VSSSGDCELT NLVDSSWFLP LSSSSSSSSP PLIHKFIGEE DSFNGNVSLG DCNDTAQRFN
101: SSVSSNQSLV SVEKLNLNAA EEDKYAISPE VEDPMDQSDD YDKKSEALEP NSPVKTSGDD EKVVVTIPTA PKRGRPRGSG KKVSAPALKN PYEFYYYSGF
201: GPRWGRKRGG SDDEKMVIND SKKSRSSASS SSDEDGHKTA AFGGGSVSFD EFDFVDEDYD VMEQDQGSDH GRKKKNEKMI MMKKTMKKGR KPVKERSLKS
301: LM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)