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AT1G03110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, alpha subunit (TAIR:AT2G21390.1); Has 13545 Blast hits to 7977 proteins in 481 species: Archae - 46; Bacteria - 4157; Metazoa - 4042; Fungi - 2887; Plants - 1145; Viruses - 0; Other Eukaryotes - 1268 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2319eggNOG:ENOG410IQGPEMBL:AF370228EMBL:AY059120
EMBL:CP002684EnsemblPlants:AT1G03110EnsemblPlants:AT1G03110.1entrez:839572
Gene3D:2.130.10.10GeneID:839572GO:GO:0005634GO:GO:0006400
GO:GO:0008618GO:GO:0030488GO:GO:0036265Gramene:AT1G03110.1
HAMAP:MF_03056hmmpanther:PTHR16288hmmpanther:PTHR16288:SF0HOGENOM:HOG000030189
InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986InterPro:IPR019775
InterPro:IPR028884KEGG:ath:AT1G03110KO:K15443OMA:LAHYCSI
Pfam:PF00400Pfscan:PS50082Pfscan:PS50294PhylomeDB:Q93WD7
PRO:PR:Q93WD7PROSITE:PS00678PROSITE:PS50082PROSITE:PS50294
Proteomes:UP000006548RefSeq:NP_563675.1scanprosite:PS00678SMART:SM00320
SMR:Q93WD7STRING:3702.AT1G03110.1SUPFAM:SSF50978TAIR:AT1G03110
tair10-symbols:AtTRM82tair10-symbols:TRM82UniGene:At.19063UniPathway:UPA00989
UniProt:Q93WD7
Coordinates (TAIR10) chr1:+:749359..751796
Molecular Weight (calculated) 46446.30 Da
IEP (calculated) 5.33
GRAVY (calculated) -0.06
Length 427 amino acids
Sequence (TAIR10)
(BLAST)
001: MQEESHIEEV EIQNKLEVAP ALISVHPSQK SVAVAVGSDL RIFDLIENCP VSLVDESDGP IRKESIRAIR YSTSGKLFVS AGDDKLVKIW SADSWRCLNT
101: VCSEKRVSAV AISSDDSHVC YADKFGVVWV IELDGINDGK TLPSKKGALL LSHYCSIITS LEFSPDGRYI LSADRDFKIR VTVFPKKPLE GAHEIQSFCL
201: GHSEFITCTA FVSTPELTQG YLMSGSGDST VRLWDITSGS LLDTCEVSTV AGHAESNENE SPTQVTVTDI CAIPNSSLAA VAIQSFQGIF LLSCDLTAHT
301: LSITKVIKIP GESFIPTSIA VSASSRLLWM VSGASNLPGS NHPGFSRVRV ISCLETESSS ILEDEQIPGG TKLLEQLQGK VTIEESVMSA AAEAVRAAMS
401: SLLMKKQYSE EKREFRKRTR NDKKTTR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)