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AT3G63130.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RAN GTPase activating protein 1
Curator
Summary (TAIR10)
Encodes a RAN GTPase activating protein involved in nuclear import, cell plate formation and mitotic spindle formation.
Computational
Description (TAIR10)
RAN GTPase activating protein 1 (RANGAP1); FUNCTIONS IN: RAN GTPase activator activity; INVOLVED IN: M phase specific microtubule process, protein import into nucleus, cytokinesis; LOCATED IN: nuclear envelope, plasma membrane, chloroplast, cell division site, cell plate; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: RAN GTPase activating protein 2 (TAIR:AT5G19320.1); Has 11260 Blast hits to 5482 proteins in 299 species: Archae - 0; Bacteria - 610; Metazoa - 5101; Fungi - 238; Plants - 692; Viruses - 0; Other Eukaryotes - 4619 (source: NCBI BLink).
Protein Annotations
BioGrid:10802DIP:DIP-46423NeggNOG:COG5238eggNOG:KOG1909
EMBL:AF214559EMBL:AL163816EMBL:AY034918EMBL:AY150448
EMBL:CP002686EnsemblPlants:AT3G63130EnsemblPlants:AT3G63130.1EnsemblPlants:AT3G63130.2
entrez:825488Gene3D:3.80.10.10GeneID:825488Genevisible:Q9LE82
GO:GO:0000911GO:GO:0005096GO:GO:0005635GO:GO:0005819
GO:GO:0005886GO:GO:0006606GO:GO:0009504GO:GO:0009507
GO:GO:0009524GO:GO:0031965GO:GO:0032153Gramene:AT3G63130.1
Gramene:AT3G63130.2hmmpanther:PTHR24106hmmpanther:PTHR24106:SF156HOGENOM:HOG000241563
InParanoid:Q9LE82IntAct:Q9LE82InterPro:IPR001611InterPro:IPR025265
InterPro:IPR032675iPTMnet:Q9LE82KEGG:ath:AT3G63130KO:K14319
OMA:LMLEVIKPaxDb:Q9LE82Pfam:PF13516Pfam:PF13943
Pfam:Q9LE82PhylomeDB:Q9LE82PIR:T48102PRIDE:Q9LE82
PRO:PR:Q9LE82ProteinModelPortal:Q9LE82Proteomes:UP000006548RefSeq:NP_001190166.1
RefSeq:NP_191872.1SMR:Q9LE82STRING:3702.AT3G63130.1SUPFAM:SSF52047
TAIR:AT3G63130tair10-symbols:ATRANGAP1tair10-symbols:RANGAP1UniGene:At.48804
UniGene:At.5159UniProt:Q9LE82
Coordinates (TAIR10) chr3:+:23325108..23326715
Molecular Weight (calculated) 58830.10 Da
IEP (calculated) 4.34
GRAVY (calculated) -0.39
Length 535 amino acids
Sequence (TAIR10)
(BLAST)
001: MDHSAKTTQN RVLSVKMWPP SKSTRLMLVE RMTKNITTPS IFSRKYGLLS VEEAEQDAKR IEDLAFATAN KHFQNEPDGD GTSAVHVYAK ESSKLMLDVI
101: KRGPQEESEV EVSKDGDVFF DISGGSRAFI EEEEARDLLR PLADPRNSYT KIRFSNRSFG SEAAKFAASV LSSIKDQLTE VDLSDFVAGR PEAEALEVMN
201: MFSSALEGSK LRYLNLSDNA LGEKGIRAFA SLINSQHDLE ELYLMNDGIS EDAARAVREL LPSTDKIRVL QFHNNMTGDE GATAIAEIVR ECPSLEDFRC
301: SSTRIGSEGG VALAEALEHC SHLKKLDLRD NMFGVEGGIA LAKTLSVLTH LTEIYMSYLN LEDEGTEALS EALLKSAPSL EVLELAGNDI TVKSTGNLAA
401: CIASKQSLAK LNLSENELKD EGTILIAKAV EGHDQLVEVD LSTNMIRRAG ARALAQTVVK KNTFKLLNIN GNFISEEGID EVNDMFKDCL DKLVPLDDND
501: PEGEDFEDED EEEEGEDGNE LESKLGSLKI KQGEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)