suba logo
AT5G27680.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RECQ helicase SIM
Curator
Summary (TAIR10)
DNA helicase
Computational
Description (TAIR10)
RECQ helicase SIM (RECQSIM); FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: DNA recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal (InterPro:IPR018329), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RECQ helicase L2 (TAIR:AT1G31360.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2380-MONOMERBioGrid:18104EC:3.6.4.12eggNOG:COG0514
eggNOG:KOG0351EMBL:AC007478EMBL:AC069556EMBL:AJ404475
EMBL:AY059754EMBL:AY133823EMBL:CP002688EnsemblPlants:AT5G27680
EnsemblPlants:AT5G27680.1entrez:832830Gene3D:1.10.10.10Gene3D:3.40.50.300
GeneID:832830Genevisible:Q9FT69GO:GO:0003676GO:GO:0005524
GO:GO:0005634GO:GO:0006281GO:GO:0006310GO:GO:0008026
GO:GO:0032508GO:GO:0043138GO:GO:0046872Gramene:AT5G27680.1
hmmpanther:PTHR13710hmmpanther:PTHR13710:SF69HOGENOM:HOG000084012InParanoid:Q9FT69
IntAct:Q9FT69InterPro:IPR001650InterPro:IPR004589InterPro:IPR009060
InterPro:IPR011545InterPro:IPR011991InterPro:IPR014001InterPro:IPR015940
InterPro:IPR027417InterPro:IPR032284KEGG:ath:AT5G27680KO:K10900
OMA:GPPQMHDPaxDb:Q9FT69Pfam:PF00270Pfam:PF00271
Pfam:PF16124Pfam:Q9FT69Pfscan:PS50030Pfscan:PS51192
Pfscan:PS51194PhylomeDB:Q9FT69PRIDE:Q9FT69PRO:PR:Q9FT69
PROSITE:PS50030PROSITE:PS51192PROSITE:PS51194ProteinModelPortal:Q9FT69
Proteomes:UP000006548RefSeq:NP_568499.1SMART:SM00487SMART:SM00490
SMR:Q9FT69STRING:3702.AT5G27680.1SUPFAM:SSF46934SUPFAM:SSF52540
TAIR:AT5G27680tair10-symbols:RECQSIMTIGRfam:TIGR00614TIGRFAMs:TIGR00614
UniGene:At.10179UniProt:Q9FT69
Coordinates (TAIR10) chr5:-:9794244..9798637
Molecular Weight (calculated) 97471.00 Da
IEP (calculated) 7.36
GRAVY (calculated) -0.53
Length 858 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLSSDQLVM KIVEMGFEKL DALEAVKAVG GKSCDDAVEY ILKGNHRTGG FKPASLLCSS GSNKILGKRA MPSSFSSSES KRQSSLLDHF RSVNQNKKKG
101: DTFGTVEVDS QLETVSEHSE EVRKSLAPVF MESSCFPEGQ LLNGCSEASS SWEKRVNSIL RNRFGISSLR SFQREALSTW VAHKDCLVLA ATGSGKSLCF
201: QIPALLTGKV VVVISPLISL MHDQCLKLSR HKVSACFLGS GQLDNCIEEK AMQGMYQIIY VCPETVVRLI KPLQKLAKTH GIALFAIDEA HCVSKWGHDF
301: RPHYRKLSVL RENFCASNLE FLEYDVPIMA LTATATVNVQ EDILESLHLS KETKIVLTSF FRPNLQFSVK HSRTKFASSY AKDFQNLVDL YSEKKNSTGK
401: KLAVISRESE EQTDFGSHDS ENIHETDYDE DEEDQENSLA KKNSSNGKEL SEAYLEDETD IFQSVDDWDV ACGEFCAMPS CELLEIPVPS EKQKDLEGLT
501: IIYVPTRKES VNIAKYLCGV GLKAAAYNAS LPKKHLRQVH QDFHDNKLQV VVATIAFGMG IDKKNVRKII HYGWLQSLEA YYQEAGRAGR DGELAECVLY
601: ADLSRAPTLL PSRRSKEQTE QAYKMLSDCF RYGMNTSQCR AKILVEYFGE EFSSKKCNSC DVCTEGPPEL VDVREEANLL FQVITAFHLQ VDNDSEHAPY
701: EDYGLGNSKQ NKLSHKPNLL FFISKLREQC EKFKETDCLW WKGLARIMEA EGYIKEMDNK DRRVEIKFIQ PTEKGKKQLD FQDDKPLYVY PEADMLLSLK
801: QDRTYSGFSE WGKGWADPEI RRQRLERRER KPRRERKPRK KRTRGRSSTK LHPWRSKE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)