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AT2G02350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 0.487
cytosol 0.286
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SKP1 interacting partner 3
Curator
Summary (TAIR10)
encodes a protein containing an F-box domain and physically interacts with SCF subunit SKP1/ASK1. The protein also exhibits similarity in sequence to phloem protein 2 (PP2) from cucumber.
Computational
Description (TAIR10)
SKP1 interacting partner 3 (SKIP3); BEST Arabidopsis thaliana protein match is: phloem protein 2-B10 (TAIR:AT2G02360.1); Has 311 Blast hits to 302 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 311; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:169EMBL:AC005312EMBL:AF263379EMBL:CP002685
EnsemblPlants:AT2G02350EnsemblPlants:AT2G02350.1entrez:814766GeneID:814766
Genevisible:Q9FV02GO:GO:0016567Gramene:AT2G02350.1hmmpanther:PTHR32278
hmmpanther:PTHR32278:SF6HOGENOM:HOG000239607InParanoid:Q9FV02InterPro:IPR001810
InterPro:IPR025886KEGG:ath:AT2G02350PaxDb:Q9FV02Pfam:PF00646
Pfam:PF14299Pfam:Q9FV02PhylomeDB:Q9FV02PIR:F84435
PRO:PR:Q9FV02PROSITE:PS50181ProteinModelPortal:Q9FV02Proteomes:UP000006548
RefSeq:NP_565282.2SMART:SM00256STRING:3702.AT2G02350.1SUPFAM:SSF81383
TAIR:AT2G02350tair10-symbols:AtPP2-B9tair10-symbols:SKIP3UniGene:At.41498
UniPathway:UPA00143UniProt:Q9FV02
Coordinates (TAIR10) chr2:-:617972..618809
Molecular Weight (calculated) 21824.50 Da
IEP (calculated) 8.36
GRAVY (calculated) -0.16
Length 191 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLWLEKASG KRCIMLSATA MNLSSMADMS QRFLWIPCPE SRFETVAALR EAYRFEFNCR MNTRVLSLRT RYSVYIVFKK ADNWCGFKGV SIEAVVGIVG
101: EESFRSFICF DTHGKGQARK RKVVAKPELR EDGWMETEIG EFYNEGGLMS SDEVEISTVE GKYAQQKRGL VILGIEIRPA KILEEFSVCR L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)