AT2G02350.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:peroxisome 0.487 cytosol 0.286 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : SKP1 interacting partner 3 | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
encodes a protein containing an F-box domain and physically interacts with SCF subunit SKP1/ASK1. The protein also exhibits similarity in sequence to phloem protein 2 (PP2) from cucumber. | ||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
SKP1 interacting partner 3 (SKIP3); BEST Arabidopsis thaliana protein match is: phloem protein 2-B10 (TAIR:AT2G02360.1); Has 311 Blast hits to 302 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 311; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:617972..618809 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 21824.50 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.36 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||||||||||
Length | 191 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSLWLEKASG KRCIMLSATA MNLSSMADMS QRFLWIPCPE SRFETVAALR EAYRFEFNCR MNTRVLSLRT RYSVYIVFKK ADNWCGFKGV SIEAVVGIVG 101: EESFRSFICF DTHGKGQARK RKVVAKPELR EDGWMETEIG EFYNEGGLMS SDEVEISTVE GKYAQQKRGL VILGIEIRPA KILEEFSVCR L |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)