AT1G78540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SH2 domain protein B | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SH2 domain protein B (SHB); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, signal transducer activity; INVOLVED IN: signal transduction, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: stem, flower, root, leaf; CONTAINS InterPro DOMAIN/s: SH2 motif (InterPro:IPR000980), STAT transcription factor, core (InterPro:IPR001217), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: SH2 domain protein A (TAIR:AT1G17040.1); Has 144 Blast hits to 142 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 74; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:29541244..29544574 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 75815.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.18 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||
| Length | 668 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASAATIETE KYSLLEDFNV DVEVDDEEYE SFSLCFWVYL LNSTTFPSTI IRQVHSDMSV SAPFLVLDEN KKMMLLPLTL LHKEAPDPVD TSSWTQVPSV 101: STKSKFPLEK WVHVGCEVSR NFMRLFIDGN MEGEQFVTSL LTKNAYPECP RKISLFSVGG DGYSVQGFIQ CAEVLPASDH VEHHYMKDPP LMLSVNKSSS 201: SGIKLDDCGV WQASCKEMFS LDVLLSNAIG QPVHKDVEVV ASLLYADTLP EAKMGEAEAP LLIRDEGVQF SSDDRPIKLL NGRSSFKLKI SQLSSNSDDR 301: LFWIKFGIRN AKDYPFLQAV SNPIRCISVS PEVQPVSVTP KRLTNIDHLS STESPDLLQN TSSVKRIRLG KESVSGSEES YQQCNSHPQT SRQFENGNGM 401: RLHEEDNSSI DSENSEMRYT ISDSTIFKYC LGNLIDKALL LKEITNNSSD DEVLEFANQV SLYSGCSHHS YQINMARELI AEGTNAWILI SRNNQHVHWD 501: NVVYEIEEHF MRISKCSSRS LTHQDFELLR RISGCYEYIT QENFEKMWCW LFPVAYSISR GLINGMWRSS SPKWIEGFIT KEEAEHSLQG QEPGTFILRF 601: PISRTWPHPD AGSLVVTYVG HDFALHHKQL KIDNICESSE RYMDAKPLQD MLLAEPELSR LGRIKRSH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)