AT5G08440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23490.1); Has 141 Blast hits to 139 proteins in 35 species: Archae - 0; Bacteria - 9; Metazoa - 21; Fungi - 6; Plants - 94; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:2721037..2726970 | ||||||||||||||||||||
| Molecular Weight (calculated) | 80565.90 Da | ||||||||||||||||||||
| IEP (calculated) | 5.40 | ||||||||||||||||||||
| GRAVY (calculated) | -0.59 | ||||||||||||||||||||
| Length | 726 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDNGHEERLA ERFSGVGLGE SSGSHENDVK NDSLFQVIKA VEAAEATIKQ QVEENNLLKA ELQRRYLELA KYKSGESLPQ TSDLGNHSNT TTGGSSPLHQ 101: SAAGISLVDR RKGKINASAA HPSGMLVVHQ HVHPNGEEAT VSNRSEDHHS EGIMTNGIVR GTVGGGGTSQ LSSSPSTISL SPMRPLLEGD HDLHINSSSH 201: ELMPVGEVNN SGTAWKQELI HKVQEQDQEI LRLRKYLADY STKEVQIRNE KYVLEKRIAH MRSAFDQQQQ DLVDAASKAL SYRQEIIEEN IRLTYALQAA 301: EQERSLFVSI LLPLLSEYSL HPQISDSQSI VSSVKVLFRH LQEKLNVTET KLKETEYQLA PWQSDVNHSN ASPLSPYQPV GVGLRYSTDS EHHHQDRRGG 401: SAASNYHLDG PESRSPAFQM PVQPALNQDE SHGPNNRVQF REPLSNTFMD DAYADVQADS NTTLENSTYV AVDDPSPSNY PILAPVLEEP SSSFSEAADD 501: DPLPGIADLQ ISGEPFPGRE LQVSGHSING TTKCNFEWVR HLEDGSVNYI DGAKRPDYLV TADDVDLYLA IEVHPLDDKN RKGELVRVFA NENCKITCHP 601: EMQSHIEKSL YNGHALFKVS YSIGYLDIWE AATLSIKKEG YSIKPTNDPV ITEKFSSSTN IVIPFDQPAD FVIIGTDGEE HLCRVVDNDA TDLSCSRDTI 701: VLTLRLFLKK TLQRKKGKKK GFLFNK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)