suba logo
AT3G52050.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : 5'-3' exonuclease family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
5'-3' exonuclease family protein; FUNCTIONS IN: 5'-3' exonuclease activity, DNA binding, catalytic activity; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: 5'-3' exonuclease, SAM-fold domain (InterPro:IPR020047), 5'-3' exonuclease, N-terminal (InterPro:IPR002421), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), 5'-3' exonuclease, N-terminal resolvase-like domain (InterPro:IPR020046), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918); BEST Arabidopsis thaliana protein match is: 5'-3' exonuclease family protein (TAIR:AT1G34380.2); Has 9747 Blast hits to 9742 proteins in 2555 species: Archae - 3; Bacteria - 6179; Metazoa - 6; Fungi - 13; Plants - 105; Viruses - 31; Other Eukaryotes - 3410 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0258eggNOG:ENOG410IQAGEMBL:BT026121EMBL:CP002686
EnsemblPlants:AT3G52050EnsemblPlants:AT3G52050.1EnsemblPlants:AT3G52050.2entrez:824368
ExpressionAtlas:Q147H2Gene3D:3.40.50.1010GeneID:824368GO:GO:0003677
GO:GO:0004527Gramene:AT3G52050.1Gramene:AT3G52050.2hmmpanther:PTHR10133
hmmpanther:PTHR10133:SF22IntAct:Q147H2InterPro:IPR002421InterPro:IPR008918
InterPro:IPR020045InterPro:IPR020046InterPro:IPR029060Pfam:PF01367
Pfam:PF02739PhylomeDB:Q147H2Proteomes:UP000006548RefSeq:NP_190773.2
RefSeq:NP_974414.2SMART:SM00279SMART:SM00475SMR:Q147H2
STRING:3702.AT3G52050.3SUPFAM:SSF47807SUPFAM:SSF88723TAIR:AT3G52050
UniGene:At.50269UniProt:Q147H2
Coordinates (TAIR10) chr3:+:19305228..19309398
Molecular Weight (calculated) 46692.00 Da
IEP (calculated) 8.00
GRAVY (calculated) -0.05
Length 425 amino acids
Sequence (TAIR10)
(BLAST)
001: MTLHLYHHSR FLWRNLCFPR SVGNLCNRNC SLISPSLARS AKYYCSSVAV SEFSNEAASG STLTSISEDV TPQSIKYPFK SEERVASTAA SSNGRVMLID
101: GTSIIYRAYY KLLARLNHGH LAHADGNADW VLTIFSSLSL LIDVLKFLPS HVAVVFDHDG VPYGTTSNSS TGYRSAKGMN FRHTLYPAYK SNRPPTPDTI
201: VQGLQYLKAS IKAMSIKVIE VPGVEADDVI GTLAMRSISA GFKVRVVSPD KDFFQILSPS LRLLRLTPRG SEMASFGMED FAKKFGNLEP AQFVDIIALA
301: GDKSDNIPGV DGIGNVHAVE LISRFGTLEN LLQSVDEIKE GKIKESLIAS ADQAILSKKL ALLRSDLPDY IVPFDTKDLT FKKPEDNGEK LSSLLIAIAD
401: YAEGFSADPV IRRAFRLWEK LEAVP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)