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AT3G10350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi
  • PMID:24124904 (2013): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: cellular metal ion homeostasis, anion transport; LOCATED IN: chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, anion-transporting (InterPro:IPR003348); BEST Arabidopsis thaliana protein match is: Anion-transporting ATPase (TAIR:AT5G60730.1); Has 2945 Blast hits to 2509 proteins in 789 species: Archae - 176; Bacteria - 2046; Metazoa - 144; Fungi - 222; Plants - 103; Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-62-MONOMEREMBL:BT029768EMBL:CP002686EnsemblPlants:AT3G10350
EnsemblPlants:AT3G10350.1entrez:820197ExpressionAtlas:A1L4Y1Gene3D:3.40.50.300
GeneID:820197GO:GO:0005524GO:GO:0016887Gramene:AT3G10350.1
hmmpanther:PTHR10803HOGENOM:HOG000197637InterPro:IPR016300InterPro:IPR025723
InterPro:IPR027417ncoils:CoilPANTHER:PTHR10803Pfam:PF02374
PhylomeDB:A1L4Y1Proteomes:UP000006548RefSeq:NP_187646.2SMR:A1L4Y1
SUPFAM:SSF52540TAIR:AT3G10350TIGRfam:TIGR00345TIGRFAMs:TIGR00345
UniGene:At.27627UniGene:At.48643UniProt:A1L4Y1
Coordinates (TAIR10) chr3:+:3208310..3210678
Molecular Weight (calculated) 44756.40 Da
IEP (calculated) 7.96
GRAVY (calculated) -0.06
Length 411 amino acids
Sequence (TAIR10)
(BLAST)
001: MATLSSYLLS SPPLCKSRFS ATSLVSGIDF ISFSPRTTLS SSSTVLPAIL SLSVKHNRRR NSLQVKSVAS PTETISEFDE MVSGTKRKYY MLGGKGGVGK
101: TSCAASLAVR FANNGHPTLV VSTDPAHSLS DSFAQDLTGG MLVPVEGPEA PLFALEINPE KAREEFRSAS QMNGGTGVKD FMDGMGLGML VEQLGELKLG
201: ELLDTPPPGL DEAIAISKVI QFLESPEYNM FTRIVFDTAP TGHTLRLLSL PDFLDASIGK ILKLRQKITS ATSAIKSVFG KEEKGPDAAD KLEKLRERMV
301: KVRELFRDTE STEFVIVTIP TVMAVSESSR LSASLKKESV PVKRLIVNQL LPPSSSDCKF CSIKRKDQMR ALDMIREDSE LSALTLMEAP LVDMEIRGVP
401: ALRFLGDIIW K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)