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AT3G52210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.910
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mRNA capping; LOCATED IN: cellular_component unknown; EXPRESSED IN: synergid; CONTAINS InterPro DOMAIN/s: mRNA capping enzyme, large subunit (InterPro:IPR004971); BEST Arabidopsis thaliana protein match is: mRNA capping enzyme family protein (TAIR:AT3G20650.1); Has 463 Blast hits to 462 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 156; Plants - 100; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G52210-MONOMERBioCyc:ARA:GQT-1417-MONOMERBioCyc:ARA:GQT-259-MONOMERDNASU:824386
EC:2.1.1.56eggNOG:COG0500eggNOG:ENOG410IP8HEMBL:AK175405
EMBL:AK176609EMBL:AK176627EMBL:AL049711EMBL:AL132972
EMBL:BT020464EMBL:BT020571EMBL:CP002686EnsemblPlants:AT3G52210
EnsemblPlants:AT3G52210.1entrez:824386Gene3D:3.40.50.150GeneID:824386
GO:GO:0003723GO:GO:0004482GO:GO:0005634hmmpanther:PTHR12189
HOGENOM:HOG000070663InParanoid:Q5HZ60InterPro:IPR004971InterPro:IPR029063
KEGG:ath:AT3G52210KO:K00565OMA:SESYMITPaxDb:Q5HZ60
Pfam:PF03291Pfam:Q5HZ60Pfscan:PS51562PhylomeDB:Q5HZ60
PIR:T49100PRIDE:Q5HZ60PRO:PR:Q5HZ60PROSITE:PS51562
ProteinModelPortal:Q5HZ60Proteomes:UP000006548RefSeq:NP_001030843.1RefSeq:NP_001030844.1
RefSeq:NP_190789.3SMR:Q5HZ60STRING:3702.AT3G52210.3SUPFAM:SSF53335
TAIR:AT3G52210UniGene:At.20311UniGene:At.68448UniProt:Q5HZ60
Coordinates (TAIR10) chr3:+:19367035..19369293
Molecular Weight (calculated) 39890.90 Da
IEP (calculated) 4.70
GRAVY (calculated) -0.34
Length 354 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGFVVSKPE QSHHRLFDFA KTAIINIFAH PYATVCELYC GGAPETDKWE AAPIGHYIGI DTSSGISSVR EAWESQRKNY DVEFFEADPS KDDFEIQLQK
101: KLEQADLVSC WRHLQLCFET EESARRLLTN VACLLKPGGY FFGITPDSST IWAKYQKNVE AYHNRSGAKP NVFPNYIRSE SYMITFELEE EKFPLFGKRY
201: QLKFSGDNAS EDHCLVHFPS LIRLAREAGL EFVEIQSLTD FYDDNRAQFA SLLMNAGPNF VDPRGKLLPR AFDLLGLYAT FIFQKPDPDI EPPLTTPIPF
301: ESSNNHDERE LPVITVITDA SAPAEDPSQG LGKIVEQKGI LGPGPADLRF SEAI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)