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AT2G37150.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G34040.1); Has 8926 Blast hits to 8756 proteins in 294 species: Archae - 0; Bacteria - 12; Metazoa - 2086; Fungi - 596; Plants - 4930; Viruses - 41; Other Eukaryotes - 1261 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AY070452EMBL:AY096670
EMBL:CP002685EnsemblPlants:AT2G37150EnsemblPlants:AT2G37150.1EnsemblPlants:AT2G37150.2
entrez:818291ExpressionAtlas:Q8VYL4Gene3D:3.30.40.10GeneID:818291
GO:GO:0008270Gramene:AT2G37150.1Gramene:AT2G37150.2hmmpanther:PTHR22937
hmmpanther:PTHR22937:SF47HOGENOM:HOG000150649IntAct:Q8VYL4InterPro:IPR001841
InterPro:IPR013083Pfam:PF13639Pfscan:PS50089PhylomeDB:Q8VYL4
PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_850278.1RefSeq:NP_973618.1
SMART:SM00184SMR:Q8VYL4STRING:3702.AT2G37150.3SUPFAM:SSF57850
TAIR:AT2G37150UniGene:At.28350UniProt:Q8VYL4
Coordinates (TAIR10) chr2:-:15603748..15605988
Molecular Weight (calculated) 61219.70 Da
IEP (calculated) 7.14
GRAVY (calculated) -1.00
Length 546 amino acids
Sequence (TAIR10)
(BLAST)
001: MGHRHFLGSS QFFDDEHDQG WNHTHPEHPY SSQATSGTSE NRSHVYPAEN MLNEGMPVSS HWNSSPGPNA YTDSGHSVER PHYNPGVSGP SHDPSVNSTV
101: PTFSAPHENY VTFASSSSYN SQTWSNASYV DHQSMESVRG AQKRKRPCPS SIYEMGSSSQ YHGDRTPADT HFPSELHLGK SITHDHDPHY MPWLMNPTYR
201: SNNLSIRGES SSRNVRSRPT LDSETSLGRN NLPRSLSLDS HSTHHHSVDH YGSGQFPGQT SHGNKDWNCA RLSPVLRDIN GFSPETNNFL PARSVVNSLS
301: VNTSGYHHHE LTGNRNPTVS HGVPGTSTLS TSSSRFSHRS TSTYRSSSHG SRSGHVASSS GDRSHLVTET YPSRHLRPPP HISWRSGDRP GRRRSSYERF
401: QPPFDEVALH ERFSSEEFMV EDRQPQYYGS RNMLDHHRDM RLDIDNMSYE ELLDLGERIG SVNTGLSDSA ISSCLLATMY YPSYQTEEQR KCAICLEEYK
501: EKEELGEVKG CGHDYHGRCI KKWLSMKNSC PICKSPALPD ASKNSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)