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AT2G33490.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : hydroxyproline-rich glycoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: stem; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G26910.1); Has 1387 Blast hits to 1097 proteins in 177 species: Archae - 4; Bacteria - 37; Metazoa - 593; Fungi - 281; Plants - 163; Viruses - 19; Other Eukaryotes - 290 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVDFeggNOG:ENOG410YD6TEMBL:AC002332EMBL:CP002685
EnsemblPlants:AT2G33490EnsemblPlants:AT2G33490.1entrez:817914Gene3D:1.20.1270.60
GeneID:817914Genevisible:O22799GO:GO:0005886Gramene:AT2G33490.1
hmmpanther:PTHR34119hmmpanther:PTHR34119:SF2HOGENOM:HOG000239103InParanoid:O22799
InterPro:IPR027267iPTMnet:O22799KEGG:ath:AT2G33490OMA:RESNKNT
PaxDb:O22799Pfam:O22799PhylomeDB:O22799PIR:B84746
PRIDE:O22799PRO:PR:O22799ProteinModelPortal:O22799Proteomes:UP000006548
RefSeq:NP_180907.2STRING:3702.AT2G33490.1SUPFAM:SSF103657TAIR:AT2G33490
UniGene:At.37921UniProt:O22799
Coordinates (TAIR10) chr2:+:14183552..14187666
Molecular Weight (calculated) 69384.80 Da
IEP (calculated) 8.95
GRAVY (calculated) -0.74
Length 623 amino acids
Sequence (TAIR10)
(BLAST)
001: MKTSLRRLRG VLHKHESKDR RDLRALVQKD ELAQASQDVE DMRDCYDSLL NAAAATANSA YEFSESLREL GACLLEKTAL NDDEESGRVL IMLGKLQFEL
101: QKLVDKYRSH IFQTITIPSE SLLNELRIVE EMQRLCDEKR NVYEGMLTRQ REKGRSKGGK GETFSPQQLQ EAHDDYENET TLFVFRLKSL KQGQTRSLLT
201: QAARHHAAQL CFFKKALSSL EEVDPHVQMV TESQHIDYHF SGLEDDDGDD EIENNENDGS EVHDDGELSF EYRVNDKDQD ADSSAGGSSE LGNSDITFPQ
301: IGGPYTAQEN EEGNYRKSHS FRRDVRAVSQ SAPLFPENRT TPPSEKLLRM RSTLTRKFNT YALPTPVETT RSPSSTTSPG HKNVGSSNPT KAITKQIWYS
401: SPLETRGPAK VSSRSMVALK EQVLRESNKN TSRLPPPLAD GLLFSRLGTL KRRSFSGPLT SKPLPNKPLS TTSHLYSGPI PRNPVSKLPK VSSSPTASPT
501: FVSTPKISEL HELPRPPPRS STKSSRELGY SAPLVSRSQL LSKPLITNSA SPLPIPPAIT RSFSIPTSNL RASDLDMSKT SLGTKKLGTP SPPLTPMSLI
601: HPPPQALPER ADHLMMSKQE RRI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)