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AT4G16144.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : associated molecule with the SH3 domain of STAM 3
Curator
Summary (TAIR10)
Encodes AMSH3, a deubiquitinating enzyme that hydrolyzes K48- and K63-linked ubiquitin chains in vitro. Required for intracellular trafficking and vacuole biogenesis.
Computational
Description (TAIR10)
associated molecule with the SH3 domain of STAM 3 (AMSH3); CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: associated molecule with the SH3 domain of STAM 1 (TAIR:AT1G48790.1); Has 901 Blast hits to 707 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 373; Fungi - 228; Plants - 224; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
Protein Annotations
BioGrid:12597EC:3.4.19.-eggNOG:COG1310eggNOG:KOG2880
EMBL:AL161543EMBL:BT020354EMBL:CP002687EMBL:Z97340
EnsemblPlants:AT4G16144EnsemblPlants:AT4G16144.1entrez:827303GeneID:827303
GO:GO:0005774GO:GO:0006897GO:GO:0007033GO:GO:0008237
GO:GO:0015031GO:GO:0016021GO:GO:0044090GO:GO:0046872
GO:GO:0046907GO:GO:0070536GO:GO:0071108GO:GO:0090316
Gramene:AT4G16144.1hmmpanther:PTHR12947hmmpanther:PTHR12947:SF4HOGENOM:HOG000195792
InterPro:IPR000555InterPro:IPR015063iPTMnet:Q5PNU3KEGG:ath:AT4G16144
KO:K11866MEROPS:M67.A06OMA:NEIREDPPaxDb:Q5PNU3
Pfam:PF01398Pfam:PF08969Pfam:Q5PNU3PhylomeDB:Q5PNU3
PRIDE:Q5PNU3PRO:PR:Q5PNU3ProteinModelPortal:Q5PNU3Proteomes:UP000006548
RefSeq:NP_680708.6SMART:SM00232SMR:Q5PNU3STRING:3702.AT4G16144.1
SUPFAM:0048572TAIR:AT4G16144tair10-symbols:AMSH3UniGene:At.22204
UniProt:Q5PNU3
Coordinates (TAIR10) chr4:-:9138053..9141422
Molecular Weight (calculated) 57271.20 Da
IEP (calculated) 5.92
GRAVY (calculated) -0.56
Length 507 amino acids
Sequence (TAIR10)
(BLAST)
001: MKIDLNKVAR EIEVDNRIPL RNYYRIADNL LRQASIYREE KNVVDLYIML LRYSSLISET IPFHRDYQAS LPQERLGSRK RLRAVINELE SLKPEFNQLV
101: DKLNRVEDES RQDGSDLPVV SYSSDAVEWP PAHKASYSRP DINKPLPTSQ PSWTYNNNLT SSSNRTQIDQ QFQKLSFDFL PPNQATLSRH SFLGPNGLKR
201: QMVAPKSEIK VQYPSNTDWG SADNSGLIEA GPSSSSASLN GDSQEVSTLN SVLSLDDGRW QRHSEAVNSQ FISDATEDPF QFVGMKQPSP PPVLAQVHQE
301: LAQICPSKVA DPRPGPAIPS LEGKEGSNSY QHLHVPVRIM DDFLRLARSN TERNLETCGV LAGSLKNRVF HITTLIIPKQ ESTSDSCQTL NEEEIFEVQD
401: RLSLFPLGWI HTHPTQTCFM SSVDLHTHYS YQIMLPEAVA IVMAPTDEST PHGIFHLSDP SGVSVIRNCQ QRGFHPHEES EDGNPIYEHC SHVFLNAKLK
501: YEVLDLR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)