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AT2G25920.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein (TAIR:AT2G25910.2); Has 131 Blast hits to 125 proteins in 54 species: Archae - 0; Bacteria - 50; Metazoa - 12; Fungi - 12; Plants - 41; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXC9eggNOG:ENOG4111YUFEMBL:AC005395EMBL:AF410337
EMBL:BT000867EMBL:CP002685EnsemblPlants:AT2G25920EnsemblPlants:AT2G25920.1
entrez:817133GeneID:817133Gramene:AT2G25920.1hmmpanther:PTHR35717
hmmpanther:PTHR35717:SF1HOGENOM:HOG000006167KEGG:ath:AT2G25920OMA:MLESPAR
PhylomeDB:O82305PIR:D84654Proteomes:UP000006548RefSeq:NP_565613.1
STRING:3702.AT2G25920.1TAIR:AT2G25920UniGene:At.26520UniProt:O82305
Coordinates (TAIR10) chr2:-:11054425..11055916
Molecular Weight (calculated) 30666.40 Da
IEP (calculated) 5.67
GRAVY (calculated) -0.88
Length 280 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSSSPTQRT HVSIPPEPGG KSLTQEANEP PVPISVSSPC GKRTRDPEDE VYLDNLRSQK RYLSEIMACS LNGLTVGDSL PVNMLESPAR SESFLYHRDD
101: LSLQYSPMSE DSDEARFCED PTATASTSSS QPESRPTSPV SPYRYQRPLT STNSPQPSPT ILHHSHTCPA SMISNAATTT TPQSRQRGSD TEGRFPSSPS
201: DICHSGDLRR TALLRSVQMR TQPCGYSSSS GPSNIDGEER MCSKSMEEDR GYNKGEDIPY AEVSSKSKSC KALDMRLCEK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)