AT1G54110.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.786 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Membrane fusion protein Use1 | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Membrane fusion protein Use1; CONTAINS InterPro DOMAIN/s: Vesicle transport protein, Use1 (InterPro:IPR019150); BEST Arabidopsis thaliana protein match is: Membrane fusion protein Use1 (TAIR:AT3G55600.1); Has 213 Blast hits to 213 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 103; Fungi - 15; Plants - 83; Viruses - 3; Other Eukaryotes - 9 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:20199909..20201623 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 26562.70 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.82 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||
| Length | 236 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGIGKTEINF MRLLSAAPNQ QNQSKLMHYV ATLREQLEQL SEEKTLEGLP RVTNAKVNEY YEKIEAVVSR IVAQVPHTEV SDEAFAKDST NDSSPKVEDD 101: TRTPNSPQLR RRIVPASSKE QSYDADPSKP IKLDTAAQAQ VNKQRKLQED LTDEMVVLAR QLKERSQMIS QSVQNTEKIL DSTEEAIEQS LASTGHATVR 201: ATKIYSESSK TSCFQWLLIL AMTCVFIMVV MLIRVT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)