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AT5G10060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ENTH/VHS family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ENTH/VHS family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), RNA polymerase II, large subunit, CTD (InterPro:IPR006569), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS family protein (TAIR:AT5G65180.1); Has 5399 Blast hits to 5001 proteins in 612 species: Archae - 19; Bacteria - 730; Metazoa - 2186; Fungi - 823; Plants - 382; Viruses - 37; Other Eukaryotes - 1222 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRAPeggNOG:KOG2669EMBL:BT002418EMBL:BT020375
EMBL:CP002688EnsemblPlants:AT5G10060EnsemblPlants:AT5G10060.1entrez:830870
Gene3D:1.25.40.90GeneID:830870Gramene:AT5G10060.1hmmpanther:PTHR12460
hmmpanther:PTHR12460:SF4HOGENOM:HOG000029886IntAct:Q8GUK8InterPro:IPR006569
InterPro:IPR006903InterPro:IPR008942KEGG:ath:AT5G10060KO:K15559
ncoils:CoilOMA:KTIADWRPfam:PF04818Pfscan:PS51391
PhylomeDB:Q8GUK8PROSITE:PS51391Proteomes:UP000006548RefSeq:NP_196568.2
SMART:SM00582SMR:Q8GUK8STRING:3702.AT5G10060.1SUPFAM:SSF48464
TAIR:AT5G10060UniGene:At.28106UniProt:Q8GUK8
Coordinates (TAIR10) chr5:-:3145994..3148049
Molecular Weight (calculated) 51957.40 Da
IEP (calculated) 9.00
GRAVY (calculated) -0.72
Length 469 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSVFSDQIL IDKLAKLNSS QQSIETLSHW CIFNRSKAEL IVTTWEKQFH STEMDQKVPL LYLANDILQN SKRQGNEFVQ EFWNVLPKAL KDIVSQGDDN
101: GKSAVARVIK IWEERRVFGS RSKSLKDVML GEDVPLPLDI SKKRPRGSKS SKRESKSSRT KLASSGGVAE KIASAYHLVV AENSNEEAEM NKCKSAVKRI
201: RKMEKDVEEA CSTAKDNPKR KSLAKELEEE EYLLRQCIEK LKSVQGSRSS LVNQLKDALR EQESELDNLK AQIQVAKEQT EEAQNMQKRL NDEDYTSKQT
301: TAATTITETN DNTKSGQASK MTPASIAAML TASTSSHMIM QSVLSSFAAE ATKTSGLSKS ESTVPVSDTN ASFPSYNNSQ NQTPTTQGQY HVIPNPPPPQ
401: FLKPPVMNNP YAFGNIPLMP PGLPPPPPPP HLIGNQQPQI PQSNSAQQSQ QGPTFQPPGI MYYGAPHHS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)