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AT1G10820.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF3755)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF3755); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3755 (InterPro:IPR022228); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3755) (TAIR:AT1G60670.2); Has 155 Blast hits to 155 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
EMBL:AK118490EMBL:BT006217EMBL:CP002684EnsemblPlants:AT1G10820
EnsemblPlants:AT1G10820.1entrez:837625ExpressionAtlas:Q8GX21GeneID:837625
GO:GO:0003677Gramene:AT1G10820.1hmmpanther:PTHR14000hmmpanther:PTHR14000:SF6
HOGENOM:HOG000239279InterPro:IPR009057InterPro:IPR022228KEGG:ath:AT1G10820
Pfam:PF12579PhylomeDB:Q8GX21Proteomes:UP000006548RefSeq:NP_172552.2
SMR:Q8GX21SUPFAM:SSF46689TAIR:AT1G10820UniGene:At.45999
UniProt:Q8GX21
Coordinates (TAIR10) chr1:-:3601437..3604650
Molecular Weight (calculated) 25871.20 Da
IEP (calculated) 8.32
GRAVY (calculated) -0.36
Length 232 amino acids
Sequence (TAIR10)
(BLAST)
001: MIPMDNHCLP TVDASGSVAA GVKQEAALVM DWSVEEQYVL ENGLAKLKDE PKISKYVKIA ATLPDKTVRD VALRCRWMTR KRRKREDNNA AKNISTRKVV
101: DTSPELNMLS NVPQQNALYV LNNMCHSTRT PFEGLSDAVM DLLQQNAQAF SQISYNLSAC KLQDNISLFH QARNNISAIL TDMKEMPGIM SRMPALPVSI
201: NDDLASNLLS STTQPISYNI PPSIHLKQEP RS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)