AT5G46400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
PRP39-2; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G04080.1); Has 41473 Blast hits to 19964 proteins in 957 species: Archae - 8; Bacteria - 2112; Metazoa - 13232; Fungi - 4812; Plants - 3812; Viruses - 173; Other Eukaryotes - 17324 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:18820032..18824522 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 118664.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.54 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.73 | ||||||||||||||||||||||||||||||||||||
| Length | 1036 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MVTTEVRTAV SDKEPLQRSP ELDSSTDFLD NDRLKETFSS GALDFDEWTL LISEIETTSF PDDIEKLCLV YDAFLLEFPL CHGYWRKYAY HKIKLCTLED 0101: AVEVFERAVQ AATYSVAVWL DYCAFAVAAY EDPHDVSRLF ERGLSFIGKD YSCCTLWDKY IEYLLGQQQW SSLANVYLRT LKYPSKKLDL YYKNFRKIAA 0201: SLKEKIKCRI DVNGDLSSDP MEEDLVHTRH TDEEISIVVR ELMGPSSSSA VSKALHTYLS IGEQFYQDSR QLMEKISCFE TQIRRPYFHV KPLDTNQLDN 0301: WHAYLSFGET YGDFDWAINL YERCLIPCAN YTEFWFRYVD FVESKGGREL ANFALARASQ TFVKSASVIH LFNARFKEHV GDASAASVAL SRCGEELGFG 0401: FVENVTKKAN MEKRLGNFEA AVTTYREALN KTLIGKENLE TTARLYVQFS RLKYVITNSA DDAAQILLEG NENVPHCKLL LEELMRLLMM HGGSRQVDLL 0501: DPIIDKELSH QADSSDGLSA EDKEEISNLY MEFIDLSGTI HDVRKALGRH IKLFPHSARA KLRGSRPSGN LFRELIQRRE KTRERLNQDL LTNKGISSIV 0601: DSPPKEKKES SLDSYGTQSK DAVRADYVNT EPNQGCLTSG HLVEGNDNVI ERETLCESQS DLSMGLKANE GGKRSHEVSL PIQASPEHGF VTKQAHFSSN 0701: SVDTVKSDAI VIQPSGSQSP QSYQSQESLR QTGRNRYHRR DLNQMHRDSK PRSQERPPQM PYSPVGTGRE ILGQHMAFTH QDNRVALQSS TSQNPQNQFQ 0801: NSALQMHPVV QTSNAYPQSQ IHGQHMIVSP PESQNPQNQC QNSTSQVQTS FAYPQTQIPQ NPVQSNYQQE GQMQSHEAYN QMWQQYYYSY YYYQQQQQLM 0901: SEQPQPNQNP QPQLDQNLVQ LLSKQYQSQA KTQYLQPQQV EQVNTQQQSQ EPQNQQQIQF QQQQQQQEWF QQQQQWQQQQ YLLYIQQQQL QGEAKGDEQR 1001: LSMPQGSTTN SDIQKSQESG AVNEANLSSD TSISSI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)