AT1G50620.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RING/FYVE/PHD zinc finger superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT3G20280.1); Has 3714 Blast hits to 3101 proteins in 414 species: Archae - 4; Bacteria - 443; Metazoa - 1736; Fungi - 538; Plants - 319; Viruses - 13; Other Eukaryotes - 661 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:18748537..18751005 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68367.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.02 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.66 | ||||||||||||||||||||||||||||||||||||
| Length | 629 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDVAISDDVP VNLESVEEKR DEETVEESPV KKKKPRFDEE VNRVAEIVLV LSALRKIRGG KPPTELEIDL MVEAKSKLVD MCQEFTPKDI IGVDAIGAVI 101: EDLGFNGKLK DQRLGFRAPK LTISEKLSLG KRKMEELKKN PVVSTTSTSP AVNNVSMAHQ WPNSEMKASA SSVNASGSHY VREASGITQA RMERPQFKSD 201: LHTGTSQGPA VPAGNYFGNT TTWSAQPHSS TSTISFGTAS DSKVPVPSSS RISDPSFRPF MSQTPPGAFP GMKGATYGQT SSPFGNNNHA EIAKLIHKVL 301: QPRAKQNLLW NPPSREYMSK AMTCQICQGT INEIETVLIC DACEKGYHLK CLHAHNIKGV PKSEWHCSRC VQLYNGKSFP PKYGRVMRSA TTAKMSSSTA 401: EVQLPAEKGV GKMDQKVSQE GMPHLETAKP TKDSAMEQTV EAEDVAMNPI VEKAMSEMVE AEGAAINPIV EAEDGAMNPI VEKAMSQIVE AEDAAINQAV 501: DANFQTQAPT GNDDAESDDP SEPVSHSETL NPPELEKKEV MRKDATERSV SADCQDKNSK IIAESSLQEE ISASQTENSP TQPPSQSDTD HSQQQKTTPN 601: VEEEKSASQA ENSPTQPPSQ SNTDHFPTA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)