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AT5G52230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : methyl-CPG-binding domain protein 13
Curator
Summary (TAIR10)
Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.
Computational
Description (TAIR10)
methyl-CPG-binding domain protein 13 (MBD13); FUNCTIONS IN: methyl-CpG binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); Has 6509 Blast hits to 4943 proteins in 596 species: Archae - 10; Bacteria - 822; Metazoa - 2790; Fungi - 554; Plants - 296; Viruses - 34; Other Eukaryotes - 2003 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZIKeggNOG:ENOG4112B6TEMBL:AB025603EMBL:AK230136
EMBL:AY136403EMBL:BT000226EMBL:CP002688EnsemblPlants:AT5G52230
EnsemblPlants:AT5G52230.1EnsemblPlants:AT5G52230.2entrez:835299Gene3D:3.30.890.10
GeneID:835299Genevisible:Q9LTJ8GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0008327Gramene:AT5G52230.1Gramene:AT5G52230.2
hmmpanther:PTHR34067hmmpanther:PTHR34067:SF1HOGENOM:HOG000153099InParanoid:Q9LTJ8
InterPro:IPR001739iPTMnet:Q9LTJ8KEGG:ath:AT5G52230OMA:KTRTKVQ
PaxDb:Q9LTJ8Pfam:Q9LTJ8Pfscan:PS50982PhylomeDB:Q9LTJ8
PRIDE:Q9LTJ8PRO:PR:Q9LTJ8PROSITE:PS50982ProteinModelPortal:Q9LTJ8
Proteomes:UP000006548RefSeq:NP_001190520.1RefSeq:NP_200036.1TAIR:AT5G52230
tair10-symbols:MBD13UniGene:At.29627UniProt:Q9LTJ8
Coordinates (TAIR10) chr5:-:21208097..21211634
Molecular Weight (calculated) 82660.60 Da
IEP (calculated) 9.94
GRAVY (calculated) -0.91
Length 746 amino acids
Sequence (TAIR10)
(BLAST)
001: MNGEGISDGL SAERKVEIRV RKNGRKDKVI VEKSAAQGLP EGWIKKLEIT NRSGRKTRRD PFFIDPKSEY IFQSFKDASR YVETGNIGHY ARKLKESDIE
101: DDDSGNGKTV LRLEYVDKRS ADDVLEKEKT IDDVRRSKRR NLSSSDEHSK NCKMTSDLSI VTSQVLEDLG KKEEVKDPIE KQLIAKRVTR SQTKASTTEE
201: VVVDLKRNLS SSNAKSEKDS VNSSVRSQKP KKEAVMKEEE EQDSSEKRIT RSKVEEKKNE LSNSVARRTS KRLAGIELEP TPELKTRAKV QRIVPLDDEP
301: TPELKTRTKV QRVVPPDDEP TPELKTRTKI QRIVPPDDEP TLELKTRTKV QRILPPDDEL TPELKSRTKV QRIVPPDDEL TPEFKTRTKV QQRIPPDDGR
401: AGKCKQPVNH VTTSGSKKTE IPLNKEVAQS CNEQSSQKPH AAAATSNNRV SADSAVGIQN IGKAVGRKPS KDKKTLKSPL IVYELNPVFH LDGYKQKEEM
501: SPVSPLSCQT SATKCEKTAA GKRVGRSSPK ANLTTSVKPT QISPLRSPNK GKQPHPSDSG SAIQRRNKLA NEYSNSSVVR GTCSEVMEKS TNSFSSAFDS
601: TLADLCKDPC IAFAIKTLTG ESLCLLNTPA ISSNPINNHT KQKGVSFTPE TPGNVNTCSE KLVFPSPPPG ANIWQDPCID FAIKTLTGAI PIGLDEPDTK
701: SKSQGMTSTT AATQEAKGRQ NNCDYMTNKT VGKPDDLRFT QSFSKD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)