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AT5G53430.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SET domain group 29
Curator
Summary (TAIR10)
Homology Subgroup III; Orthology Group 2 - A putative histone methyltransferase (predicted to methylate H3K4) related to the Drosophila trithorax group proteins TRX and TRR and the yeast gene SET1. A plant line expressing an RNAi construct directed against this gene has reduced agrobacterium-mediated tumor formation.
Computational
Description (TAIR10)
SET domain group 29 (SDG29); FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: DNA mediated transformation, regulation of transcription, DNA-dependent; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Post-SET domain (InterPro:IPR003616), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), PWWP (InterPro:IPR000313), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: SET domain protein 16 (TAIR:AT4G27910.1); Has 7010 Blast hits to 6787 proteins in 464 species: Archae - 2; Bacteria - 389; Metazoa - 3222; Fungi - 817; Plants - 1208; Viruses - 0; Other Eukaryotes - 1372 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G53430-MONOMEREC:2.1.1.43eggNOG:COG2940eggNOG:COG5141
eggNOG:KOG1080EMBL:AB020754EMBL:AK117221EMBL:AY049755
EMBL:BT005981EMBL:CP002688EnsemblPlants:AT5G53430EnsemblPlants:AT5G53430.1
entrez:835424Gene3D:3.30.40.10GeneID:835424Genevisible:Q8GZ42
GO:GO:0005634GO:GO:0008270GO:GO:0009294GO:GO:0009506
GO:GO:0018024Gramene:AT5G53430.1hmmpanther:PTHR13793hmmpanther:PTHR13793:SF5
HOGENOM:HOG000030707InParanoid:Q8GZ42InterPro:IPR000313InterPro:IPR001214
InterPro:IPR001965InterPro:IPR003616InterPro:IPR011011InterPro:IPR013083
InterPro:IPR019786InterPro:IPR019787InterPro:IPR025780iPTMnet:Q8GZ42
KEGG:ath:AT5G53430ncoils:CoilOMA:SWCTEVSPaxDb:Q8GZ42
Pfam:PF00628Pfam:PF00855Pfam:PF00856Pfam:PF13831
Pfam:PF13832Pfam:Q8GZ42Pfscan:PS50016Pfscan:PS50280
Pfscan:PS50812Pfscan:PS50868Pfscan:PS51566PhylomeDB:Q8GZ42
PRIDE:Q8GZ42PRO:PR:Q8GZ42PROSITE:PS01359PROSITE:PS50016
PROSITE:PS50280PROSITE:PS50812PROSITE:PS50868PROSITE:PS51566
ProteinModelPortal:Q8GZ42Proteomes:UP000006548RefSeq:NP_200155.2scanprosite:PS01359
SMART:SM00249SMART:SM00317SMART:SM00508SMR:Q8GZ42
STRING:3702.AT5G53430.1SUPFAM:SSF57903SUPFAM:SSF63748SUPFAM:SSF82199
TAIR:AT5G53430tair10-symbols:ATX5tair10-symbols:SDG29tair10-symbols:SET29
UniGene:At.46146UniProt:Q8GZ42
Coordinates (TAIR10) chr5:+:21677623..21683166
Molecular Weight (calculated) 119129.00 Da
IEP (calculated) 8.12
GRAVY (calculated) -0.56
Length 1043 amino acids
Sequence (TAIR10)
(BLAST)
0001: MIIKRKLKTL KRCNSTNEED DIVRKKRKVN LNGGGSGGDY YYPLNLLGEI GAGIVPGKNG FSVSLCKQVS CSPKVEVVEE EEEEEEIKST RLVSRPPLVK
0101: TSRGRVQVLP SRFNDSVIEN WRKDNKSSGE EREEEIEEEA CRKEKVKVSS NHSLKIKQQE TKFTPRNYKY SSSSALCGEI DDEDKCEEIV RYGNSFEMKK
0201: QRYVDDEPRP KKEGVYGPED FYSGDLVWGK SGRNEPFWPA IVIDPMTQAP ELVLRSCIPD AACVMFFGHS GTENERDYAW VRRGMIFPFV DYVERLQEQS
0301: ELRGCNPRDF QMALEEALLA DQGFTEKLMQ DIHMAAGNQT FDDSVYRWVE EAAGSSQYLD HVAPSQDMKK YRNPRACVGC GMVLSFKMAQ KMKALIPGDQ
0401: LLCQPCSKLT KPKHVCGICK RIWNHLDSQS WVRCDGCKVW IHSACDQISH KHFKDLGETD YYCPTCRTKF DFELSDSEKP DSKSKLGKNN APMVLPDKVI
0501: VVCSGVEGIY FPSLHLVVCK CGSCGPERKA LSEWERHTGS KAKNWRTSVK VKSSKLPLEE WMMKLAEFHA NATAAKPPKR PSIKQRKQRL LSFLREKYEP
0601: VNVKWTTERC AVCRWVEDWD YNKIIICNRC QIAVHQECYG TRNVRDFTSW VCKACETPEI KRECCLCPVK GGALKPTDVE TLWVHVTCAW FQPEVCFASE
0701: EKMEPALGIL SIPSSNFVKI CVICKQIHGS CTQCCKCSTY YHAMCASRAG YRMELHCLEK NGRQITKMVS YCSYHRAPNP DTVLIIQTPS GVFSAKSLVQ
0801: NKKKSGTRLI LANREEIEES AAEDTIPIDP FSSARCRLYK RTVNSKKRTK EEGIPHYTGG LRHHPSAAIQ TLNAFRHVAE EPKSFSSFRE RLHHLQRTEM
0901: ERVCFGRSGI HGWGLFARRN IQEGEMVLEY RGEQVRGIIA DLREARYRRE GKDCYLFKIS EEVVVDATEK GNIARLINHS CMPNCYARIM SVGDDESRIV
1001: LIAKTTVASC EELTYDYLFD PDEPDEFKVP CLCKSPNCRK FMN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)