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AT1G17110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ubiquitin-specific protease 15
Curator
Summary (TAIR10)
Encodes a ubiquitin-specific protease, and its activity has been confirmed in an in vitro assay. ubp15 mutants have defects in cell proliferation, and the associated processes of leaf, root, stem, flower, and silique development. UBP15 can be found in the nucleus and cytoplasm in transient assays. Though UBP15 is expressed in many tissues, UBP15 transcript levels are higher in rosette leaves and inflorescences than in other parts of the plant.
Computational
Description (TAIR10)
ubiquitin-specific protease 15 (UBP15); CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 18 (TAIR:AT4G31670.1); Has 7942 Blast hits to 7177 proteins in 265 species: Archae - 0; Bacteria - 54; Metazoa - 4137; Fungi - 1242; Plants - 1075; Viruses - 7; Other Eukaryotes - 1427 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G17110-MONOMERBioCyc:ARA:GQT-1818-MONOMERBioGrid:23521EC:3.4.19.12
eggNOG:ENOG410XQ92eggNOG:KOG1865EMBL:AC007651EMBL:AF302665
EMBL:CP002684EnsemblPlants:AT1G17110EnsemblPlants:AT1G17110.1entrez:838281
ExpressionAtlas:Q9FPS9GeneID:838281Genevisible:Q9FPS9GO:GO:0006511
GO:GO:0016021GO:GO:0016579GO:GO:0036459GO:GO:0046872
hmmpanther:PTHR24006hmmpanther:PTHR24006:SF503HOGENOM:HOG000242869InParanoid:Q9FPS9
InterPro:IPR001394InterPro:IPR002893InterPro:IPR018200InterPro:IPR028889
MEROPS:C19.096PaxDb:Q9FPS9Pfam:PF00443Pfam:PF01753
Pfam:Q9FPS9Pfscan:PS50235Pfscan:PS50865PhylomeDB:Q9FPS9
PIR:H86306PRIDE:Q9FPS9PRO:PR:Q9FPS9PROSITE:PS00972
PROSITE:PS01360PROSITE:PS50235PROSITE:PS50865ProteinModelPortal:Q9FPS9
Proteomes:UP000006548RefSeq:NP_564014.1scanprosite:PS00972SMR:Q9FPS9
STRING:3702.AT1G17110.2SUPFAM:SSF144232SUPFAM:SSF54001TAIR:AT1G17110
tair10-symbols:UBP15TMHMM:TMhelixUniGene:At.48199UniProt:Q9FPS9
Coordinates (TAIR10) chr1:-:5845816..5849889
Molecular Weight (calculated) 103682.00 Da
IEP (calculated) 7.83
GRAVY (calculated) -0.57
Length 924 amino acids
Sequence (TAIR10)
(BLAST)
001: MLEPRGADIP ILFLVLVVLP VVAYILLGKW SNISEKRVRA NLLAQMAAEE ALRAETVVNA DRGVRFESVA TENRAQRTRT KTVSAGGGAV RAEFDAGARE
101: TVAEQRSDSV TATCGVTVVA PVNNNELHVC ARCFGPAKTR CSRCKSVRYC SGKCQIIHWR VAHKDECVPV ESCSSSSERV SFEKDSVLYD HGMDSTMYSN
201: NTTQAAKGKT SKSSVDFASL GISQNDITPQ INTQGRKSVG KQHSSKANRE SCRRDSATVF DSSDEAASAG GDNKTSHIKH KSRGNSYAAE TNPRRHSVDS
301: SAVQMNGQSF VSGMQESHKH ENNLGVRSSF GCPNTQYPSN GTRTATLPRT GINKSGEQSC TETSKKGQVA AVSKTVRSKD TGISEESNGI SSTMGIMKMM
401: GLRNSTKHDD RYKNLKMLFP YEEFLKFFQC EVFDLSPRGL VNCGNSCYAN AVLQSLTCTK PLVAYLLRRS HSRSCSGKDW CLMCELEQHV MMLRESGGPL
501: SASRILSHMR SINCQIGDGS QEDAHEFLRL LVASMQSICL ERLGGETKVD PRLQETTLVQ HMFGGRLRSK VKCLRCDHES ERYENIMDLT LEIYGWVESL
601: QDALTQFTRP EDLDGENMYR CSRCAGYVRA RKELSIHEAP NILTIVLKRF QEGRYGKINK CISFPEMLDM IPFMTRTGDV PPLYMLYAVI VHLDTLNASF
701: SGHYISYVKD LRGNWYRIDD SEIHPVPMTQ VMSEGAYMLF YMRSYPRPQR GEHNGKAPVH HSQPRNEMKE QRKPVNRFKP RADHKNTESS SSEWSLFTSS
801: DEASFTTEST RDSFSTIDYT DVCHVVDSSS PFAIFNNVYH NVEPSPHNTV ACRMFSGTKP ETRYFVEQET NHNNTVVLDA TPSLYPIPAP YPPHDYYDQS
901: MYVNYETNPE FNNGQDQDRT YSYW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)