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AT1G75340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Zinc finger C-x8-C-x5-C-x3-H type family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); Has 7050 Blast hits to 2615 proteins in 330 species: Archae - 4; Bacteria - 260; Metazoa - 1495; Fungi - 1019; Plants - 181; Viruses - 41; Other Eukaryotes - 4050 (source: NCBI BLink).
Protein Annotations
BioGrid:29089DNASU:843870eggNOG:ENOG410IK4FeggNOG:ENOG410XT4K
EMBL:AC023754EMBL:AY037195EMBL:BT004555EMBL:CP002684
EnsemblPlants:AT1G75340EnsemblPlants:AT1G75340.1EnsemblPlants:AT1G75340.2entrez:843870
ExpressionAtlas:Q9FWS3Gene3D:4.10.1000.10GeneID:843870Genevisible:Q9FWS3
GO:GO:0003677GO:GO:0005635GO:GO:0005643GO:GO:0015031
GO:GO:0046872GO:GO:0051028hmmpanther:PTHR11224hmmpanther:PTHR11224:SF36
HOGENOM:HOG000077477InParanoid:Q94C30InterPro:IPR000571KEGG:ath:AT1G75340
KO:K14321OMA:RYGENCRPaxDb:Q9FWS3Pfam:PF00642
Pfam:Q9FWS3Pfscan:PS50103PhylomeDB:Q9FWS3PIR:H96783
PRIDE:Q9FWS3PRO:PR:Q9FWS3PROSITE:PS50103ProteinModelPortal:Q9FWS3
Proteomes:UP000006548RefSeq:NP_001185401.1RefSeq:NP_565108.2SMART:SM00356
SMR:Q9FWS3STRING:3702.AT1G75340.1SUPFAM:SSF90229TAIR:AT1G75340
UniGene:At.16256UniGene:At.68091UniProt:Q9FWS3
Coordinates (TAIR10) chr1:-:28269153..28271873
Molecular Weight (calculated) 46800.30 Da
IEP (calculated) 8.67
GRAVY (calculated) -0.82
Length 435 amino acids
Sequence (TAIR10)
(BLAST)
001: MRKELCRNFQ RGSCRYGENC RFLHPQQAKP NNPFGFGTQN QQQQQQQQQQ NSSNPFGFGV QSGGSSRPNQ FQNTWSRTAS TPTGGGAAAS TQQTGKQTQP
101: ADHKCTDPAA CKRVMQDDFK NERPMWKLTC YGHWKYFPCD VTGDISYEEL RAVAYEEAKR GIPLQSIVER ERNLQNSKIA EFENFLRNPY KGSVTANQSP
201: FAATTPSIFP QSSQINSPSP AFSGFNQQTA FSNTNAGGLS SSGPPNAFAS FNQQTTFPNT NAGGVSSSGP PNPFASFTQQ SNNQQTAFSN TNAGGLSSSG
301: PPNAFASFNK QPNAFSVNTP QPVPSGPSGF QTNPSTTFKP ASFGPGPGFA TTPQNNNIFG QSTPTPATNT SQNNQTAFNF NVPVASFTAP AINTTNTSSG
401: TELQIGGDPV DSSIWLKEKW NPGEIPEQAP PDAFV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)