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AT1G09230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.590
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); Has 908 Blast hits to 898 proteins in 138 species: Archae - 0; Bacteria - 6; Metazoa - 655; Fungi - 76; Plants - 104; Viruses - 1; Other Eukaryotes - 66 (source: NCBI BLink).
Protein Annotations
BioGrid:22684eggNOG:ENOG410IQ3TeggNOG:ENOG410XQEYEMBL:AC003114
EMBL:AK318900EMBL:AY091076EMBL:AY122947EMBL:CP002684
EnsemblPlants:AT1G09230EnsemblPlants:AT1G09230.1entrez:837443Gene3D:3.30.70.330
GeneID:837443Genevisible:Q8RWV8GO:GO:0000166GO:GO:0000398
GO:GO:0005634GO:GO:0005689GO:GO:0010229GO:GO:0030626
GO:GO:0097157hmmpanther:PTHR16105hmmpanther:PTHR16105:SF0HOGENOM:HOG000030409
InParanoid:Q8RWV8IntAct:Q8RWV8InterPro:IPR000504InterPro:IPR012677
KEGG:ath:AT1G09230KO:K13157OMA:EDRQRMNPaxDb:Q8RWV8
Pfam:PF00076Pfam:Q8RWV8Pfscan:PS50102PhylomeDB:Q8RWV8
PIR:B86225PRIDE:Q8RWV8PRO:PR:Q8RWV8PROSITE:PS50102
ProteinModelPortal:Q8RWV8Proteomes:UP000006548Reactome:R-ATH-72165RefSeq:NP_172394.1
SMART:SM00360SMR:Q8RWV8STRING:3702.AT1G09230.1SUPFAM:SSF54928
TAIR:AT1G09230UniGene:At.21135UniGene:At.66808UniProt:Q8RWV8
Coordinates (TAIR10) chr1:-:2979637..2982563
Molecular Weight (calculated) 48715.20 Da
IEP (calculated) 9.08
GRAVY (calculated) -0.47
Length 442 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAHATSEPA VNLPATQFES QVTEPFGVTL LVRHLPDGIP HDIVSRLFSQ YGASAVRPCS GGKLRNAAFV DFKNEAFASQ AHRQLNGLRF LGKVLQVQRA
101: NKPNDNKKSR QIEESVTKGN AFSTVSTNND SKSGQILSGE PIAPKLGIDY PFPPHLQYAY PPPDANILAN ITNALIAVPP LYTQVLHLMN KMNLPPPFRL
201: ALPTPPLPKA GPQQTDLEHQ SSSESEMESD EDIGTSKSGR KRARHGFLVG LGMDKDVPHE TVGVKPSSLT PKEIPRIRKN KHVMQIKITS KVTQDEYKEE
301: SENEDPADEP KEKDSNLKPF ASLEELEKGR LPPQDILSLP MFKNYTAGNP SVVLYIKNLA KDVVIDDFYY IFGSQFESSE VAKSSLGVRL MQEGRMRGQA
401: FLTFPSVEVA HRALNLVNGF VFKGKPMIIQ FGRTPGAAKP NE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)