AT4G10180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : light-mediated development protein 1 / deetiolated1 (DET1) | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a nuclear-localized protein that acts as a repressor of photomorphogenesis and may be involved in chromatin remodeling. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DE-ETIOLATED 1 (DET1); FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, negative regulation of photomorphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: De-etiolated protein 1, Det1 (InterPro:IPR019138), Six-hairpin glycosidase-like (InterPro:IPR008928); Has 248 Blast hits to 240 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:6346543..6349146 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62494.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.96 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 543 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFTSGNVTAR VFERQIRTPP PGASVNRARH FYENLVPSYT LYDVESPDHC FRKFTEDGLF LISFSRNHQE LIVYRPSWLT YSTTDDSTTT LPPLPRRASK 101: FDSFFTQLYS VNLASSNELI CKDFFLYHQT RRFGLFATST AQIHDSSSPS NDAVPGVPSI DKITFVLLRL DDGVVLDERV FLHDFVNLAH NMGVFLYDDL 201: LAILSLRYQR IHLLQIRDSG HLVDARAIGY FCREDDELFL NSSSQAMMSQ DKSKQQSLSG SKEDDTGENG LRHSLSQPSG SNSFLSGVKQ RLLSFIFREI 301: WNEESDNVMR VQSLKKKFYF HFQDYVDLII WKVQFLDRQH LLIKFGSVDG GVTRSADHHP AFFAVYNMET TDIVAFYQNS AEDLYQLFEQ FSDHFTVSSS 401: TPFMNFVTSH SNNVYALEQL KYTKNKSNSF SQFVKKMLLS LPFSCQSQSP SPYFDQSLFR FDEKLISAAD RHRQSSDNPI KFISRRQPQT LKFKIKPGPE 501: CGTADGRSKK ICSFLFHPHL PLAISIQQTL FMPPSVVNIH FRR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)