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AT5G45610.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : protein dimerizations
Curator
Summary (TAIR10)
Encodes a homologue of the ATR-interacting protein ATRIP. Mutant (named sensitive to UV2 or suv2) is UVB-hypersensitive and defective in DNA damage response.
Computational
Description (TAIR10)
SENSITIVE TO UV 2 (SUV2); Has 65 Blast hits to 63 proteins in 29 species: Archae - 0; Bacteria - 2; Metazoa - 9; Fungi - 13; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIVIeggNOG:ENOG410YJ51EMBL:AB492859EMBL:CP002688
EnsemblPlants:AT5G45610EnsemblPlants:AT5G45610.1entrez:834601GeneID:834601
GO:GO:0006974GO:GO:0007050GO:GO:0046983Gramene:AT5G45610.1
hmmpanther:PTHR35761HOGENOM:HOG000176952InterPro:IPR016024KEGG:ath:AT5G45610
ncoils:CoilOMA:IRCENDRPhylomeDB:C8KI33Proteomes:UP000006548
RefSeq:NP_199374.4STRING:3702.AT5G45610.1SUPFAM:SSF48371TAIR:AT5G45610
tair10-symbols:SUV2UniGene:At.30003UniProt:C8KI33
Coordinates (TAIR10) chr5:-:18496397..18499673
Molecular Weight (calculated) 72810.00 Da
IEP (calculated) 6.41
GRAVY (calculated) -0.38
Length 646 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGNDEEFND EFLLAIDSIE TTLKKADMYR PLPPPYLPTF LPAPPPSTKI SSSLSHPMQL QSSAGQQRKQ IQVPDPFLSY SPPRELSQRV VSGFNDALMD
101: YSNSTVVTAA KPISPTTSNR RCDSEKDLEI DRLKKELERV SKQLLDVEQE CSQLKKGKSK ETESRNLCAD DNRGQCSTVH ASKRIDLEPD VATSSVNHRE
201: NDSRMALDDK RSFKTTGVQA DVANHSDLSK KLLDIWRTSN YQDPRKNLIS ELLLACSTDL QILFSFMKIS TPPQELNKQE AKTSSDRQSS KALESEKVYQ
301: LYSAVTKISY GFVNLKTLVE PLLDLCKAET AVLVHRSLRV LHVLLEHICG DEKRFEASWD ANWHSLFKLM NQIASKRTEQ DVKQEALSIM NIIVMSTDAY
401: TARESFVSKE VFESISLLLR KEGGLHVRKE AIHLFYLLLN CPKLYDTFDS LHEEKNSSDT ENDSEGNFFA LEAFGKIFEG LADCLTSPRK TSEDLELCRN
501: VIMILALAAS SGNSGYELLS SHKLPQDSSF LMLILHLLVA EIDSESTEFH PKAEIFKART LLMREILILL NRLVSGLSSS ATILKELTTS RDMASLTVDA
601: ATRLSRKRNL LGKPESSVER MRNTEIMDLA RIFKKRVFAF LGDNTI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)