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AT4G12640.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA recognition motif (RRM)-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue SPOC, C-terminal (InterPro:IPR012921), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA binding (TAIR:AT2G43410.4); Has 8554 Blast hits to 7148 proteins in 405 species: Archae - 8; Bacteria - 199; Metazoa - 4614; Fungi - 1472; Plants - 1436; Viruses - 0; Other Eukaryotes - 825 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IQWBeggNOG:ENOG410YA1XEMBL:CP002687EnsemblPlants:AT4G12640
EnsemblPlants:AT4G12640.1entrez:826877Gene3D:3.30.70.330GeneID:826877
GO:GO:0000166GO:GO:0003676Gramene:AT4G12640.1hmmpanther:PTHR23189
hmmpanther:PTHR23189:SF41InParanoid:F4JRD9InterPro:IPR000504InterPro:IPR012677
InterPro:IPR012921iPTMnet:F4JRD9KEGG:ath:AT4G12640OMA:MAACKAK
PaxDb:F4JRD9Pfam:PF00076Pfam:PF07744Pfscan:PS50102
PRIDE:F4JRD9PROSITE:PS50102ProteinModelPortal:F4JRD9Proteomes:UP000006548
RefSeq:NP_193001.2SMART:SM00360SMR:F4JRD9STRING:3702.AT4G12640.1
SUPFAM:SSF54928TAIR:AT4G12640UniGene:At.46444UniProt:F4JRD9
Coordinates (TAIR10) chr4:+:7462697..7467630
Molecular Weight (calculated) 92863.00 Da
IEP (calculated) 7.02
GRAVY (calculated) -0.87
Length 823 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSRGRERMM MKEDGRGRNP PSRHLWVGNL PHGILERELA DRFLRFGELE SLAFQPGRSY AFVNFNHDED AFAAIESLQG FPLSGNPLRI EFAKAEKSST
101: GSRTDDIYRH DEQRSAARGS SFVQRDSRMR YESPDTYSKS KMNDRNAEPS EVLYIGFPAS LKVDDALLRN VFSSFGEITK VTVFPGRSYA FVQFRNLMAA
201: CKAKESLQGK LFGNPRVHIC FAKSEPSSSG SGRGPSGRSL SPPYRSVDRL GSSEGYLQDR NYGSISRIPS VREPHYIEDR DLEDSEGYIF NRKRDSSSDG
301: GPAYGRSRST HRFPQDMHEY HGSPGEMGTS FRDNPHRFQT RSSEYEEPWD LPEDDYYYQE IKRLKTRSSQ PERQLPGHQL SGIEQERRPF SRASADFSPK
401: DAFERNYEAG QLRYNQTVEQ PLNLAIRNGD KSSLREPHEE LMGGYPLPSV VPERKRYTPE LNRPSLKDWN WEGTIAKGGN PICRAKCFPV GKVMDMMLPE
501: FLDCTARTGL DMLAKHYYQS SKAWVVFFVP GSDADIVFYD EFMHYLEEKQ RAAVSKLDDT TTLFLVPPSD FSEKVLKVPG KLSISGVILR LECGGSGSGG
601: PVQQQGERKD TDLLTYYGET SYSEASGAFP DVGNPRIPGP TAFLRSAGRD NQSASMDPYV EDKHDQLSHR YSGSDWPPRD TNPRSSPFID HTVQKHSGFV
701: PGKQQNADLS RYHDTETPVP AGFQPEQLTH LASSLPRQQQ QVQNTPNQPE RYAPEGRASF SHLQHAQTPS IPQLVTPQNQ NVQIQSSNSQ QQEETEANPQ
801: KRLQATLQLA AALLQQIQQA KPS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)