suba logo
AT1G08910.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc ion binding;zinc ion binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 3001 (EMB3001); FUNCTIONS IN: zinc ion binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, MIZ-type (InterPro:IPR004181); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G41580.1); Has 1002 Blast hits to 979 proteins in 199 species: Archae - 0; Bacteria - 25; Metazoa - 593; Fungi - 182; Plants - 101; Viruses - 6; Other Eukaryotes - 95 (source: NCBI BLink).
Protein Annotations
EC:2.3.2.-EMBL:AC000106EMBL:CP002684EMBL:KP067953
EnsemblPlants:AT1G08910EnsemblPlants:AT1G08910.1entrez:837412Gene3D:3.30.40.10
GeneID:837412GO:GO:0005634GO:GO:0006970GO:GO:0008270
GO:GO:0009651GO:GO:0009737GO:GO:0016874GO:GO:0016925
GO:GO:0019789GO:GO:0051176hmmpanther:PTHR10782hmmpanther:PTHR10782:SF4
InterPro:IPR004181InterPro:IPR013083InterPro:IPR027229KEGG:00220+6.3.2.-
KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-KEGG:ath:AT1G08910KO:K04706
OMA:SMPPETWPANTHER:PTHR10782:SF4Pfam:PF02891Pfscan:PS51044
PIR:H86220PROSITE:PS51044Proteomes:UP000006548Reactome:R-ATH-3108214
Reactome:R-ATH-4615885Reactome:R-ATH-5696395RefSeq:NP_172366.3STRING:3702.AT1G08910.1
TAIR:AT1G08910tair10-symbols:EMB3001UniGene:At.42248UniPathway:UPA00886
UniProt:F4HXS5
Coordinates (TAIR10) chr1:+:2856227..2860816
Molecular Weight (calculated) 91207.70 Da
IEP (calculated) 6.71
GRAVY (calculated) -0.43
Length 829 amino acids
Sequence (TAIR10)
(BLAST)
001: MVIPATSRFG FRAEFNTKEF QASCISLANE IDAAIGRNEV PGNIQELALI LNNVCRRKCD DYQTRAVVMA LMISVKSACQ LGWFPERETQ ELLAIIDLMW
101: NGFSCPENVT SCVNSPVTLI SQVIERFYPC VKLGHILVSF EAKPESKMMM KDFHISKKMP HSPKQKVGLF VVRTEDISRS NCIVHPQGVS FLLNGKGIDK
201: RVNISMESGP QLPTNVTALL NLGANLLQAI GCFGGSYLIA IAFMDVIPLP NKPLLKDYVH PEVVGSNSDC DIIEGPSRIS LSCPISRTRI KLPVKGHVCK
301: HLQCFDFWNY VNMNTRRHHG AARIILEEVG RNAADVVISA DGTWMVETEN DEDVELVPET THDHGDPNSF INLGPTVKNP ARDENEMETS TQVEEHNPCL
401: SEIQGPSNDT HRPASDYTML NQSHTSTNTL PQLPRTLNAF DGQQFVNLPQ VINTRDSPAS QALPMTFSPT PSPQDILATN AANFGTSMPA AQSSQFQGSH
501: VTSLGNCEGR TSDLMARWNH IYGRVQTQFP PAPLSHHHYS MQNQSPSPAQ QRPVPSYIAH PQTFHVNYGE NADQRWMPSS IAHPQTLPVN YGGNTNQRPI
601: PSSIAHPQTL PVNYRGNTDH RSTPYSITHL QTLLNYGGNA DQRPMPSSIT NLQTLPATYG GYAHQRPMSS SITHPRTSPV NYGGTPDQRP MPSSITHPQT
701: LPVSYGGTTD QILNPGGAMG QFSSREFMNL TPANTENWRP QSRMRGSVAP GTGYDHMIIH PTRPVHPQAQ TPPAPLSTSY DGADEIQAFI GHPSYPVSNN
801: ETQAGTSSLP VAEGLGYSGS FWSMPPETW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)