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AT5G18100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 1.000
ASURE: peroxisome
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24130194 (2013): peroxisome
  • PMID:19329564 (2009): peroxisome
  • PMID:18998720 (2009): extracellular region
  • PMID:17951448 (2007): peroxisome
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : copper/zinc superoxide dismutase 3
Curator
Summary (TAIR10)
A putative peroxisomal CuZnSOD inducible by a high-light pulse.
Computational
Description (TAIR10)
copper/zinc superoxide dismutase 3 (CSD3); FUNCTIONS IN: superoxide dismutase activity; INVOLVED IN: response to oxidative stress, oxygen and reactive oxygen species metabolic process, removal of superoxide radicals; LOCATED IN: peroxisome, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Superoxide dismutase, copper/zinc, binding site (InterPro:IPR018152), Superoxide dismutase, copper/zinc binding (InterPro:IPR001424); BEST Arabidopsis thaliana protein match is: copper/zinc superoxide dismutase 1 (TAIR:AT1G08830.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:17204EC:1.15.1.1eggNOG:COG2032eggNOG:KOG0441
EMBL:AB012246EMBL:AF061520EMBL:AK117742EMBL:BT003689
EMBL:CP002688EnsemblPlants:AT5G18100EnsemblPlants:AT5G18100.1entrez:831928
Gene3D:2.60.40.200GeneID:831928Genevisible:Q9FK60GO:GO:0004784
GO:GO:0005507GO:GO:0005615GO:GO:0005773GO:GO:0005777
GO:GO:0006979GO:GO:0008270GO:GO:0019430GO:GO:0071457
GO:GO:0071472GO:GO:0071484GO:GO:0071486GO:GO:0071493
gramene_pathway:1.15.1.1gramene_pathway:DETOX1-PWYhmmpanther:PTHR10003hmmpanther:PTHR10003:SF31
HOGENOM:HOG000263447InParanoid:Q9FK60IntAct:Q9FK60InterPro:IPR001424
InterPro:IPR018152InterPro:IPR024134iPTMnet:Q9FK60KEGG:ath:AT5G18100
KO:K04565OMA:HGPPNEEPANTHER:PTHR10003PaxDb:Q9FK60
Pfam:PF00080Pfam:Q9FK60PhylomeDB:Q9FK60PIR:T51731
PRIDE:Q9FK60PRINTS:PR00068PRO:PR:Q9FK60PROSITE:PS00332
ProteinModelPortal:Q9FK60Proteomes:UP000006548RefSeq:NP_001119245.1RefSeq:NP_197311.1
scanprosite:PS00332SMR:Q9FK60STRING:3702.AT5G18100.1SUPFAM:SSF49329
TAIR:AT5G18100tair10-symbols:CSD3UniGene:At.49035UniGene:At.7547
UniProt:Q9FK60
Coordinates (TAIR10) chr5:+:5987221..5988706
Molecular Weight (calculated) 16942.10 Da
IEP (calculated) 7.73
GRAVY (calculated) -0.21
Length 164 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAPRGNLRA VALIAGDNNV RGCLQFVQDI SGTTHVTGKI SGLSPGFHGF HIHSFGDTTN GCISTGPHFN PLNRVHGPPN EEERHAGDLG NILAGSNGVA
101: EILIKDKHIP LSGQYSILGR AVVVHADPDD LGKGGHKLSK STGNAGSRVG CGIIGLQSSA DAKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)