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AT1G12520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : copper chaperone for SOD1
Curator
Summary (TAIR10)
Copper/zinc superoxide dismutase copper chaperone. Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments. Contains three domains, central, ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta.
Computational
Description (TAIR10)
copper chaperone for SOD1 (CCS); FUNCTIONS IN: superoxide dismutase copper chaperone activity, superoxide dismutase activity; INVOLVED IN: cellular copper ion homeostasis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Superoxide dismutase, copper/zinc binding (InterPro:IPR001424), Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: copper/zinc superoxide dismutase 2 (TAIR:AT2G28190.1); Has 3500 Blast hits to 3494 proteins in 885 species: Archae - 2; Bacteria - 672; Metazoa - 1229; Fungi - 394; Plants - 875; Viruses - 122; Other Eukaryotes - 206 (source: NCBI BLink).
Protein Annotations
BioGrid:23048eggNOG:COG2608eggNOG:KOG4656EMBL:AC025416
EMBL:AC025417EMBL:AF179371EMBL:AK175663EMBL:AK176660
EMBL:AK221656EMBL:AY050357EMBL:AY094034EMBL:CP002684
EMBL:DQ003058EnsemblPlants:AT1G12520EnsemblPlants:AT1G12520.1entrez:837808
Gene3D:2.60.40.200GeneID:837808Genevisible:Q9LD47GO:GO:0005829
GO:GO:0006801GO:GO:0006878GO:GO:0008270GO:GO:0009507
GO:GO:0009570GO:GO:0016532GO:GO:0030001GO:GO:0043085
GO:GO:0055114gramene_pathway:1.15.1.1gramene_pathway:DETOX1-PWYhmmpanther:PTHR10003
hmmpanther:PTHR10003:SF27HOGENOM:HOG000263450InParanoid:Q9LD47IntAct:Q9LD47
InterPro:IPR001424InterPro:IPR006121InterPro:IPR024134InterPro:IPR024142
KEGG:ath:AT1G12520KO:K04569OMA:IWEVIGHPANTHER:PTHR10003
PANTHER:PTHR10003:SF27PaxDb:Q9LD47Pfam:PF00080Pfam:PF00403
Pfam:Q9LD47Pfscan:PS50846PhylomeDB:Q9LD47PIR:D86259
PRIDE:Q9LD47PRO:PR:Q9LD47PROSITE:PS50846ProteinModelPortal:Q9LD47
Proteomes:UP000006548RefSeq:NP_001031029.1RefSeq:NP_001031030.1RefSeq:NP_563910.2
SMR:Q9LD47STRING:3702.AT1G12520.1SUPFAM:SSF49329SUPFAM:SSF55008
TAIR:AT1G12520tair10-symbols:ATCCStair10-symbols:CCSUniGene:At.10574
UniGene:At.75575UniProt:Q9LD47
Coordinates (TAIR10) chr1:-:4267277..4268900
Molecular Weight (calculated) 33853.20 Da
IEP (calculated) 5.46
GRAVY (calculated) -0.04
Length 320 amino acids
Sequence (TAIR10)
(BLAST)
001: MASILRSVAT TSAVVAAASA IPIAIAFSSS SSSSSTNPKS QSLNFSFLSR SSPRLLGLSR SFVSSPMATA LTSDRNLHQE DRAMPQLLTE FMVDMTCEGC
101: VNAVKNKLET IEGIEKVEVD LSNQVVRILG SSPVKAMTQA LEQTGRKARL IGQGVPQDFL VSAAVAEFKG PDIFGVVRFA QVSMELARIE ANFTGLSPGT
201: HSWCINEYGD LTNGAASTGS LYNPFQDQTG TEPLGDLGTL EADKNGEAFY SGKKEKLKVA DLIGRAVVVY KTDDNKSGPG LTAAVIARSA GVGENYKKLC
301: SCDGTVIWEA TNSDFVASKV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)