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AT5G20230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Predictors External Curations
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 17317660
TAIR : vacuole 15539469
TAIR : plasma membrane 12805588
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:31541795 (2020): plasma membrane
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:24030099 (2013): plasma membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:18998720 (2009): extracellular region
  • PMID:17317660 (2007): plasma membrane
  • PMID:16602701 (2006): plasma membrane
  • PMID:16356755 (2006): extracellular region
  • PMID:15574830 (2004): plasma membrane
  • PMID:14517339 (2003): plasma membrane
  • PMID:12805588 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : blue-copper-binding protein
Curator
Summary (TAIR10)
Al-stress-induced gene
Computational
Description (TAIR10)
blue-copper-binding protein (BCB); FUNCTIONS IN: electron carrier activity, copper ion binding; INVOLVED IN: response to oxidative stress, response to salt stress, aluminum ion transport, response to wounding, response to absence of light; LOCATED IN: anchored to plasma membrane, plasma membrane, vacuole, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972), Blue (type 1) copper domain (InterPro:IPR000923); BEST Arabidopsis thaliana protein match is: Cupredoxin superfamily protein (TAIR:AT1G72230.1); Has 2817 Blast hits to 1998 proteins in 202 species: Archae - 2; Bacteria - 847; Metazoa - 51; Fungi - 106; Plants - 1463; Viruses - 11; Other Eukaryotes - 337 (source: NCBI BLink).
Protein Annotations
BioGrid:17421eggNOG:ENOG410JEYNeggNOG:ENOG410Z0W4EMBL:AB035137
EMBL:AF296825EMBL:AY034986EMBL:AY052681EMBL:AY088549
EMBL:AY142577EMBL:CP002688EMBL:Y18227EMBL:Z15058
EnsemblPlants:AT5G20230EnsemblPlants:AT5G20230.1entrez:832145Gene3D:2.60.40.420
GeneID:832145Genevisible:Q07488GO:GO:0005773GO:GO:0005886
GO:GO:0006979GO:GO:0009055GO:GO:0009646GO:GO:0015690
GO:GO:0031225GO:GO:0046658GO:GO:0046872GO:GO:0050832
GO:GO:0055114GO:GO:0070417GO:GO:1901141Gramene:AT5G20230.1
hmmpanther:PTHR33021hmmpanther:PTHR33021:SF55HOGENOM:HOG000237627InParanoid:Q07488
InterPro:IPR003245InterPro:IPR008972InterPro:IPR028871KEGG:ath:AT5G20230
OMA:SEYFICTPaxDb:Q07488Pfam:PF02298Pfam:Q07488
Pfscan:PS51485PhylomeDB:Q07488PIR:I39698PIR:T51838
PRIDE:Q07488PRO:PR:Q07488ProDom:PD003122PROSITE:PS00196
PROSITE:PS51485ProteinModelPortal:Q07488Proteomes:UP000006548RefSeq:NP_197523.1
scanprosite:PS00196SMR:Q07488STRING:3702.AT5G20230.1SUPFAM:SSF49503
TAIR:AT5G20230tair10-symbols:ATBCBtair10-symbols:BCBtair10-symbols:SAG14
UniGene:At.20630UniProt:Q07488
Coordinates (TAIR10) chr5:+:6826626..6827408
Molecular Weight (calculated) 20054.60 Da
IEP (calculated) 4.43
GRAVY (calculated) 0.20
Length 196 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGVFKTVTF LVLVFAAVVV FAEDYDVGDD TEWTRPMDPE FYTTWATGKT FRVGDELEFD FAAGRHDVAV VSEAAFENCE KEKPISHMTV PPVKIMLNTT
101: GPQYFICTVG DHCRFGQKLS ITVVAAGATG GATPGAGATP APGSTPSTGG TTPPTAGGTT TPSGSSGTTT PAGNAASSLG GATFLVAFVS AVVALF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)