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AT3G55030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30962257 (2019): plastid
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:12766230 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : phosphatidylglycerolphosphate synthase 2
Curator
Summary (TAIR10)
Encodes a phosphatidylglycerolphosphate synthase.
Computational
Description (TAIR10)
phosphatidylglycerolphosphate synthase 2 (PGPS2); FUNCTIONS IN: CDP-alcohol phosphatidyltransferase activity, CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: microsome, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (InterPro:IPR004570), CDP-alcohol phosphatidyltransferase (InterPro:IPR000462); BEST Arabidopsis thaliana protein match is: phosphatidylglycerolphosphate synthase 1 (TAIR:AT2G39290.1); Has 7778 Blast hits to 7778 proteins in 2365 species: Archae - 2; Bacteria - 5045; Metazoa - 114; Fungi - 125; Plants - 120; Viruses - 0; Other Eukaryotes - 2372 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT3G55030-MONOMERBioGrid:9985EC:2.7.8.5eggNOG:COG0558
eggNOG:KOG1617EMBL:AF370186EMBL:AL132970EMBL:AY059144
EMBL:CP002686EnsemblPlants:AT3G55030EnsemblPlants:AT3G55030.1entrez:824669
GeneID:824669Genevisible:Q9M2W3GO:GO:0005739GO:GO:0005783
GO:GO:0006655GO:GO:0008444GO:GO:0009941GO:GO:0016021
GO:GO:0030145GO:GO:0031090GO:GO:0043231GO:GO:0046474
Gramene:AT3G55030.1gramene_pathway:2.7.8.5gramene_pathway:PWY-5269gramene_pathway:PWY4FS-7
gramene_pathway:PWY4FS-8hmmpanther:PTHR14269hmmpanther:PTHR14269:SF20HOGENOM:HOG000010898
InParanoid:Q9M2W3InterPro:IPR000462InterPro:IPR004570KEGG:00564+2.7.8.5
KEGG:ath:AT3G55030KO:K00995OMA:WNQQSAFPaxDb:Q9M2W3
Pfam:PF01066Pfam:Q9M2W3PhylomeDB:Q9M2W3PIR:T47642
PIRSF:PIRSF000847PRIDE:Q9M2W3PRO:PR:Q9M2W3PROSITE:PS00379
ProteinModelPortal:Q9M2W3Proteomes:UP000006548RefSeq:NP_191063.1scanprosite:PS00379
SMR:Q9M2W3STRING:3702.AT3G55030.1TAIR:AT3G55030tair10-symbols:PGPS2
TIGRfam:TIGR00560TIGRFAMs:TIGR00560TMHMM:TMhelixUniGene:At.20918
UniGene:At.48769UniPathway:UPA00084UniProt:Q9M2W3
Coordinates (TAIR10) chr3:+:20396860..20398224
Molecular Weight (calculated) 25221.20 Da
IEP (calculated) 10.13
GRAVY (calculated) 0.46
Length 233 amino acids
Sequence (TAIR10)
(BLAST)
001: MGEEDTATVD QNSFGGGKDS LLRNRHSSPL PSPTQLSSKV ITLPTVLTLG RVAAVPILVA TFYVDCWWGR TATTSIFIAA AITDWLDGYI ARKMRLGSEF
101: GAFLDPVADK LMVAATLILL CTKPMVAVVL GPVPWLVTVP SIAIIGREIT MSAVREWAAS QNGKLSEAVA VNSLGKWKTA TQMIALTILL ASRDSSFERL
201: LPSGIGLLYV SAGLSIWSLV VYMRKIWRVL LKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)