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AT1G08830.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21166475 (2011): cytosol
  • PMID:18998720 (2009): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : copper/zinc superoxide dismutase 1
Curator
Summary (TAIR10)
Encodes a cytosolic copper/zinc superoxide dismutase CSD1 that can detoxify superoxide radicals. Its expression is affected by miR398-directed mRNA cleavage. Regulated by biotic and abiotic stress.
Computational
Description (TAIR10)
copper/zinc superoxide dismutase 1 (CSD1); FUNCTIONS IN: superoxide dismutase activity; INVOLVED IN: in 7 processes; LOCATED IN: cytosol, cytoplasm; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Superoxide dismutase, copper/zinc, binding site (InterPro:IPR018152), Superoxide dismutase, copper/zinc binding (InterPro:IPR001424); BEST Arabidopsis thaliana protein match is: copper/zinc superoxide dismutase 2 (TAIR:AT2G28190.1); Has 4705 Blast hits to 4689 proteins in 1491 species: Archae - 6; Bacteria - 2000; Metazoa - 1249; Fungi - 303; Plants - 666; Viruses - 142; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G08830-MONOMERBioCyc:ARA:GQT-656-MONOMERBioCyc:MetaCyc:AT1G08830-MONOMERBioGrid:22646
EC:1.15.1.1eggNOG:COG2032eggNOG:KOG0441EMBL:AC003981
EMBL:AY050932EMBL:AY087273EMBL:AY091168EMBL:CP002684
EMBL:EF408820EMBL:X60935EnsemblPlants:AT1G08830EnsemblPlants:AT1G08830.1
EnsemblPlants:AT1G08830.2entrez:837405Gene3D:2.60.40.200GeneID:837405
Genevisible:P24704GO:GO:0004784GO:GO:0005507GO:GO:0005615
GO:GO:0005634GO:GO:0005829GO:GO:0006979GO:GO:0008270
GO:GO:0009651GO:GO:0010039GO:GO:0010193GO:GO:0019430
GO:GO:0034599GO:GO:0035195GO:GO:0042742GO:GO:0046688
GO:GO:0071280GO:GO:0071329GO:GO:0071457GO:GO:0071472
GO:GO:0071484GO:GO:0071493Gramene:AT1G08830.1Gramene:AT1G08830.2
gramene_pathway:1.15.1.1gramene_pathway:DETOX1-PWYhmmpanther:PTHR10003HOGENOM:HOG000263447
InParanoid:P24704IntAct:P24704InterPro:IPR001424InterPro:IPR018152
InterPro:IPR024134KEGG:ath:AT1G08830KO:K04565OMA:FSTNEWC
PANTHER:PTHR10003PaxDb:P24704Pfam:P24704Pfam:PF00080
PhylomeDB:P24704PIR:S19117PRIDE:P24704PRINTS:PR00068
PRO:PR:P24704PROSITE:PS00087PROSITE:PS00332ProteinModelPortal:P24704
Proteomes:UP000006548RefSeq:NP_001077494.1RefSeq:NP_172360.1scanprosite:PS00087
scanprosite:PS00332SMR:P24704STRING:3702.AT1G08830.1SUPFAM:SSF49329
TAIR:AT1G08830tair10-symbols:CSD1UniGene:At.25177UniProt:P24704
Coordinates (TAIR10) chr1:+:2827700..2829053
Molecular Weight (calculated) 15098.60 Da
IEP (calculated) 5.38
GRAVY (calculated) -0.08
Length 152 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKGVAVLNS SEGVTGTIFF TQEGDGVTTV SGTVSGLKPG LHGFHVHALG DTTNGCMSTG PHFNPDGKTH GAPEDANRHA GDLGNITVGD DGTATFTITD
101: CQIPLTGPNS IVGRAVVVHA DPDDLGKGGH ELSLATGNAG GRVACGIIGL QG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)