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AT2G28190.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30865669 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:16648217 (2006): plastid
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : copper/zinc superoxide dismutase 2
Curator
Summary (TAIR10)
Encodes a chloroplastic copper/zinc superoxide dismutase CSD2 that can detoxify superoxide radicals. Its expression is affected by miR398-directed mRNA cleavage.
Computational
Description (TAIR10)
copper/zinc superoxide dismutase 2 (CSD2); FUNCTIONS IN: superoxide dismutase activity; INVOLVED IN: in 6 processes; LOCATED IN: thylakoid, apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Superoxide dismutase, copper/zinc, binding site (InterPro:IPR018152), Superoxide dismutase, copper/zinc binding (InterPro:IPR001424); BEST Arabidopsis thaliana protein match is: copper/zinc superoxide dismutase 1 (TAIR:AT1G08830.2); Has 4720 Blast hits to 4704 proteins in 1488 species: Archae - 6; Bacteria - 1989; Metazoa - 1257; Fungi - 323; Plants - 669; Viruses - 141; Other Eukaryotes - 335 (source: NCBI BLink).
Protein Annotations
BioGrid:2715EC:1.15.1.1eggNOG:COG2032eggNOG:KOG0441
EMBL:AC005851EMBL:AF061519EMBL:AJ238521EMBL:AJ238522
EMBL:AK227096EMBL:AY064050EMBL:AY087944EMBL:AY133756
EMBL:CP002685EnsemblPlants:AT2G28190EnsemblPlants:AT2G28190.1entrez:817365
Gene3D:2.60.40.200GeneID:817365Genevisible:O78310GO:GO:0004784
GO:GO:0005507GO:GO:0005615GO:GO:0006979GO:GO:0008270
GO:GO:0009507GO:GO:0009570GO:GO:0009579GO:GO:0010039
GO:GO:0034599GO:GO:0035195GO:GO:0046688GO:GO:0048046
GO:GO:0071329GO:GO:0071457GO:GO:0071472GO:GO:0071484
GO:GO:0071486GO:GO:0071493Gramene:AT2G28190.1gramene_pathway:1.15.1.1
gramene_pathway:DETOX1-PWYhmmpanther:PTHR10003hmmpanther:PTHR10003:SF34HOGENOM:HOG000263447
InParanoid:O78310IntAct:O78310InterPro:IPR001424InterPro:IPR018152
InterPro:IPR024134InterPro:IPR031074KEGG:ath:AT2G28190KO:K04565
OMA:GAPEDECPANTHER:PTHR10003PANTHER:PTHR10003:SF34PaxDb:O78310
Pfam:O78310Pfam:PF00080PhylomeDB:O78310PIR:T51730
PRIDE:O78310PRINTS:PR00068PRO:PR:O78310PROSITE:PS00087
PROSITE:PS00332ProteinModelPortal:O78310Proteomes:UP000006548RefSeq:NP_565666.1
scanprosite:PS00087scanprosite:PS00332SMR:O78310STRING:3702.AT2G28190.1
SUPFAM:SSF49329TAIR:AT2G28190tair10-symbols:CSD2tair10-symbols:CZSOD2
UniGene:At.20409UniProt:O78310
Coordinates (TAIR10) chr2:+:12014548..12016303
Molecular Weight (calculated) 22245.30 Da
IEP (calculated) 7.02
GRAVY (calculated) -0.11
Length 216 amino acids
Sequence (TAIR10)
(BLAST)
001: MAATNTILAF SSPSRLLIPP SSNPSTLRSS FRGVSLNNNN LHRLQSVSFA VKAPSKALTV VSAAKKAVAV LKGTSDVEGV VTLTQDDSGP TTVNVRITGL
101: TPGPHGFHLH EFGDTTNGCI STGPHFNPNN MTHGAPEDEC RHAGDLGNIN ANADGVAETT IVDNQIPLTG PNSVVGRAFV VHELKDDLGK GGHELSLTTG
201: NAGGRLACGV IGLTPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)