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AT5G10320.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 54 Blast hits to 53 proteins in 19 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:830896eggNOG:ENOG410IHH5eggNOG:ENOG41124M6EMBL:CP002688
EnsemblPlants:AT5G10320EnsemblPlants:AT5G10320.1entrez:830896ExpressionAtlas:F4KGT2
GeneID:830896Gramene:AT5G10320.1hmmpanther:PTHR35754InParanoid:F4KGT2
OMA:RRANSTIPaxDb:F4KGT2PhylomeDB:F4KGT2PRIDE:F4KGT2
Proteomes:UP000006548RefSeq:NP_196594.2TAIR:AT5G10320UniGene:At.32392
UniProt:F4KGT2
Coordinates (TAIR10) chr5:-:3244180..3246603
Molecular Weight (calculated) 45883.30 Da
IEP (calculated) 4.52
GRAVY (calculated) -0.31
Length 403 amino acids
Sequence (TAIR10)
(BLAST)
001: MEELKRLEKF QTVVSSITCH GLLSSSSSDS ASSSRFLSNL VLFLVQPCGE LDLDSKLGLL SEFLPKISGP FLEEISRSLE LDDEATTPLN TISAECQNSC
101: VKRSVMDNVD PYMSQKHQEV VAMVGLDAMK RANSTLEDFS RSYFMFHRLD INEPQSIFRY LPVLSFTESY IYQMDALNEK IVSESACGSQ VIYSSHGWNA
201: ESRVLFETNP LKPLGDLLER EALLTNRVQQ EFNSGEEYWA LERKLCHALS NKNKICLEDV MRAIHLKSFD YRVLNLLLYK LRGEEVNELH MDFLSISEFL
301: VEVADDLFDY EDDVLENNFN VLRMFVGIFG SSNAPTELAK RISEAEEKYE EIMKSLDPHL SSNYQRRCEE ATKEGGKISG HSLGTWNIPA VISDEEAYRS
401: AQR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)