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AT3G49840.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.939
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Uncharacterized conserved protein (DUF2215)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Uncharacterized conserved protein (DUF2215); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2215 (InterPro:IPR019358); BEST Arabidopsis thaliana protein match is: Uncharacterized conserved protein (DUF2215) (TAIR:AT5G67610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EMBL:AK226747EMBL:CP002686EnsemblPlants:AT3G49840EnsemblPlants:AT3G49840.1
entrez:824146GeneID:824146GO:GO:0016021Gramene:AT3G49840.1
hmmpanther:PTHR31587hmmpanther:PTHR31587:SF2InterPro:IPR019358KEGG:ath:AT3G49840
OMA:RIVFLIMPfam:PF10225PhylomeDB:Q0WVK0Proteomes:UP000006548
RefSeq:NP_190553.3TAIR:AT3G49840TMHMM:TMhelixUniGene:At.67607
UniGene:At.73998UniProt:Q0WVK0
Coordinates (TAIR10) chr3:+:18484551..18486687
Molecular Weight (calculated) 50843.40 Da
IEP (calculated) 10.18
GRAVY (calculated) 0.26
Length 457 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDSSSVIVR SSNFIVVILF LNLVTFFSLV SSNELVFAVG ETGSLQVTPR TEVIYSPGLK RGITSICERL HIHGLQRRLE HIDRYAHSLK LTLLSNNASN
101: SIDVCFHRNS SRAIGMCPDN QWKRVSKGLP WVGIMSPFDY KILDIRTFGG SSNVSTVELV AKQEFFIYRI VFLIMGIVLL SLASRLSKSV AFYYIGAMSI
201: GIVILVTLII NQGIKRLPTR GKSRFQLFFY SSMIGVGGYF LQYIRGLVQD LLMQIEISED LYIPLAILLV VFVFMLGAWS GFWTVKKFVV TKDGSVDIST
301: SIFVSWSIRA FAVALILQSS LDPLLAGGAL ITGILISLIL KSISRKLLAQ RIYEQDDETE SCSPGLIHAT SFASPLPRGS NKKLRTVPLS ESDIFPSSFH
401: KTPEGRRKLT KEELQKFTKE STENALKELV SSPGFGEWAV KNAKRITVNP IKESSSK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)