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AT2G42730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.986
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), F-box domain, cyclin-like (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Transcription elongation factor S-II, central domain (InterPro:IPR003618), Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor S-IIM (InterPro:IPR017890), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (TAIR:AT2G42720.1); Has 2687 Blast hits to 2614 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 415; Fungi - 138; Plants - 2100; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1594eggNOG:KOG1105EMBL:CP002685EnsemblPlants:AT2G42730
EnsemblPlants:AT2G42730.1entrez:818873ExpressionAtlas:F4IP72Gene3D:1.10.472.30
Gene3D:3.80.10.10GeneID:818873GO:GO:0003677GO:GO:0005634
GO:GO:0006351GO:GO:0008270Gramene:AT2G42730.1hmmpanther:PTHR31639
hmmpanther:PTHR31639:SF6InterPro:IPR001810InterPro:IPR003617InterPro:IPR003618
InterPro:IPR006566InterPro:IPR013101InterPro:IPR017923InterPro:IPR032675
ncoils:CoilPaxDb:F4IP72Pfam:PF00646Pfam:PF07500
Pfam:PF07723Pfscan:PS50181Pfscan:PS51319Pfscan:PS51321
PRIDE:F4IP72PROSITE:PS50181PROSITE:PS51319PROSITE:PS51321
ProteinModelPortal:F4IP72Proteomes:UP000006548RefSeq:NP_181801.1SMART:SM00509
SMART:SM00510SMART:SM00579SMR:F4IP72STRING:3702.AT2G42730.1
SUPFAM:0037100SUPFAM:SSF46942SUPFAM:SSF52047SUPFAM:SSF81383
TAIR:AT2G42730UniGene:At.36975UniProt:F4IP72
Coordinates (TAIR10) chr2:-:17787454..17791218
Molecular Weight (calculated) 83866.60 Da
IEP (calculated) 10.12
GRAVY (calculated) -0.31
Length 737 amino acids
Sequence (TAIR10)
(BLAST)
001: MNAKDVISRL PDEVLGRILS LISTKEAVST SVLSKRWKNM FVLVSNLDID DRQSVPKTKQ NRIEIHRNYM AFVDKLLDTQ RGSSIKKLTL KSHVGVRGGT
101: DSSRIQSWIC NVLDHGVMDL DVFITLKGKS PPVPAMIFKS KTLVKLRVGR GFTIKLSQDV SLPLLRTLCL DSVNFVGGHN VVGTLISRCP VLEELVVEER
201: RCVDWTCSVS SPSLKRLHIR FDRKFTSISL DAPNLIYYKH SGYVLGKYPN VKLDSLIEAR LNLRMDETRM VGVRNGSLGS IPADMRNLIN GIRNVRILHL
301: SSHTLELLYF SCKEMPLFDS LVSLSIGNDK ARGWQMLPLL IKNSPNLETL IFMGLDHYIT NRCGDVCVCY DTDESITSCL SSSQVKVLEI LSYQGTTREL
401: NQMKHFLEKL PCLELVKICV VNNSNNLQTT MEMRNLMMLP RASSKYRERE RPFQQLPNYL LLRCFETLVT SRERESKQTH TKDRSELRTT MQKQEFLELY
501: EAALRAAKSV KGVKNSSKVS RFVDARNRLK DAPTSLACEV VSKTSMGKGL SFLNDHKNPH IRSEGRLLRD LWMKILYASG REKSHDRETQ VKIPTHSTMK
601: KTGDSKRDKV REILQTSLVK VASEIVDTEM KTRVTACDPS VVAVSVESAM FEKLGCFMGP HKAKYRSILF NMGDSNNPDL RRKVLIGEIN GERLVTMERQ
701: EMGSEKIQKE VQRIKENARF KEESRMKILQ SASMIMT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)