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AT1G33080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.992
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : MATE efflux family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G33110.1); Has 10684 Blast hits to 10626 proteins in 1975 species: Archae - 206; Bacteria - 7736; Metazoa - 140; Fungi - 326; Plants - 1352; Viruses - 0; Other Eukaryotes - 924 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0534eggNOG:KOG1347EMBL:AC006424EMBL:AC021045
EMBL:AY080844EMBL:AY133850EMBL:CP002684EnsemblPlants:AT1G33080
EnsemblPlants:AT1G33080.1entrez:840204ExpressionAtlas:Q8RXK1GeneID:840204
Genevisible:Q8RXK1GO:GO:0015238GO:GO:0015297GO:GO:0016021
hmmpanther:PTHR11206hmmpanther:PTHR11206:SF102HOGENOM:HOG000177025InParanoid:Q8RXK1
InterPro:IPR002528KEGG:ath:AT1G33080KO:K03327OMA:NMVITYL
PaxDb:Q8RXK1Pfam:PF01554PhylomeDB:Q8RXK1ProteinModelPortal:Q8RXK1
Proteomes:UP000006548RefSeq:NP_174584.2SMR:Q8RXK1STRING:3702.AT1G33080.1
TAIR:AT1G33080TIGRfam:TIGR00797TIGRFAMs:TIGR00797TMHMM:TMhelix
UniGene:At.39998UniProt:Q8RXK1
Coordinates (TAIR10) chr1:+:11985752..11990327
Molecular Weight (calculated) 54187.00 Da
IEP (calculated) 8.67
GRAVY (calculated) 0.61
Length 494 amino acids
Sequence (TAIR10)
(BLAST)
001: MARREGEVTE TLLKKSTENR GEDRDGLGMK EKVWRESKKL WVVAGPAIFT RFSTSGLSLI SQAFIGHLGS TELAAYSITL TVLLRFSNGI LLGMASALET
101: LCGQAYGAKQ YHMLGIYLQR SWIVLTGCTI CLMPIYIFAG PILLALGQEE RLVRVARIIA LWVIGINISF VPSFTCQMFL QAQSKNKIIA YVAAVSLGVH
201: VFLSWLLVVH FDFGIAGAMT SSLVAHWLPN IAQVLFVTCG GCTETWRGFS WLAFKDLWPV FKLSVSSGGM ICLELWYNSI LILLTGNLKN AEVALNALAI
301: CININALEMM VAFGFMAAAS VRVSNEIGSG NSNGAKFATM VVVSTSLSIG IIFFFIFLFL RERVSYIFTT SEAVATQVAD LSPLLAFSIL LNSIQPVLSG
401: VAVGAGWQKY VTVVNLACYY LVGIPSGLFL GYVVGLQVKG VWLGMIFGIF VQTCVLTVMT MRTDWDQQVS SSLKRLNRWV EPESPSRNQT LQNE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)