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AT2G16595.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22923678 (2012): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Translocon-associated protein (TRAP), alpha subunit
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Translocon-associated protein (TRAP), alpha subunit; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, endoplasmic reticulum; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translocon-associated protein (TRAP), alpha subunit (InterPro:IPR005595); BEST Arabidopsis thaliana protein match is: Translocon-associated protein (TRAP), alpha subunit (TAIR:AT2G21160.1); Has 245 Blast hits to 245 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 29; Plants - 60; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNTMeggNOG:KOG1631EMBL:BT015171EMBL:CP002685
EnsemblPlants:AT2G16595EnsemblPlants:AT2G16595.1entrez:816160GeneID:816160
GO:GO:0005783GO:GO:0005789GO:GO:0016021Gramene:AT2G16595.1
hmmpanther:PTHR12924hmmpanther:PTHR12924:SF0HOGENOM:HOG000242079InterPro:IPR005595
KEGG:ath:AT2G16595KO:K13249OMA:TAIYNQTPfam:PF03896
PhylomeDB:Q6AWS7Proteomes:UP000006548RefSeq:NP_179250.2STRING:3702.AT2G16595.1
TAIR:AT2G16595TMHMM:TMhelixUniGene:At.48481UniProt:Q6AWS7
Coordinates (TAIR10) chr2:+:7198363..7200086
Molecular Weight (calculated) 27408.80 Da
IEP (calculated) 4.84
GRAVY (calculated) 0.09
Length 251 amino acids
Sequence (TAIR10)
(BLAST)
001: MRTSFRLLFF AFLLLVSPFL KVALCQSDSE DSGFEVSDVG EEESDAEEVF GLELTSAPGI ETLCVFPKNS AKIIKAGVET ELLVGMKNDG QSNVDIVAVK
101: GSLHLPFDQN AVQNLTALSF SNASVPTSAQ ATLPYAFAVS KFLQAGAFDF VGTIIYEIDG KPYQSIFYNG TIEVVEDGPL FRMESVFLSG LLIFVIAFLA
201: IYIQNVLKHM TKKTKRAPKV EVGTATKDAS HDEWLEGTSY TQSSSKSKKK K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)