suba logo
AT1G26940.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 0.902
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:22923678 (2012): Golgi
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: cyclophilin71 (TAIR:AT3G44600.1); Has 11471 Blast hits to 11465 proteins in 2220 species: Archae - 104; Bacteria - 5913; Metazoa - 1282; Fungi - 864; Plants - 581; Viruses - 0; Other Eukaryotes - 2727 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G26940-MONOMEREC:5.2.1.8eggNOG:COG0652eggNOG:KOG0884
EMBL:AC005508EMBL:AK118273EMBL:AY085848EMBL:BT005541
EMBL:CP002684EnsemblPlants:AT1G26940EnsemblPlants:AT1G26940.1entrez:839584
Gene3D:2.40.100.10GeneID:839584Genevisible:Q8LDR3GO:GO:0003755
GO:GO:0005768GO:GO:0005783GO:GO:0005794GO:GO:0005802
GO:GO:0006457GO:GO:0042277Gramene:AT1G26940.1hmmpanther:PTHR11071
hmmpanther:PTHR11071:SF17HOGENOM:HOG000006301InParanoid:Q8LDR3InterPro:IPR002130
InterPro:IPR024936InterPro:IPR029000KEGG:ath:AT1G26940OMA:PMNEEQR
PANTHER:PTHR11071PaxDb:Q8LDR3Pfam:PF00160Pfam:Q8LDR3
Pfscan:PS50072PhylomeDB:Q8LDR3PIR:D86396PRIDE:Q8LDR3
PRO:PR:Q8LDR3PROSITE:PS50072ProteinModelPortal:Q8LDR3Proteomes:UP000006548
RefSeq:NP_564267.1SMR:Q8LDR3STRING:3702.AT1G26940.1SUPFAM:SSF50891
TAIR:AT1G26940UniGene:At.41165UniProt:Q8LDR3
Coordinates (TAIR10) chr1:+:9343193..9344962
Molecular Weight (calculated) 25516.60 Da
IEP (calculated) 8.45
GRAVY (calculated) -0.32
Length 226 amino acids
Sequence (TAIR10)
(BLAST)
001: MGITRNLILG LACLAFVSIA KALPHEPELG SARVVFQTSY GDIEFGFYPT VAPKTVDHIF KLVRLGGYNT NHFFRVDKGF VAQVADVASG RSAPMNEEQR
101: KEAEKKIVGE FSDVKHVRGT LSMGRYDDPN SAQSSFSMLL GNAPHLDRQY AVFGKVTKGD ETLSKLEEVP TRREGIFVMP TERITILSTY YYDTKMESCE
201: EERSVLKRRL QASFVEVERQ RMKCFP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)