AT2G16530.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : 3-oxo-5-alpha-steroid 4-dehydrogenase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
3-oxo-5-alpha-steroid 4-dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors, 3-oxo-5-alpha-steroid 4-dehydrogenase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal (InterPro:IPR001104); BEST Arabidopsis thaliana protein match is: 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (TAIR:AT1G72590.1); Has 1047 Blast hits to 1045 proteins in 211 species: Archae - 0; Bacteria - 24; Metazoa - 384; Fungi - 161; Plants - 181; Viruses - 0; Other Eukaryotes - 297 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr2:-:7163276..7165064 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 38680.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.37 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.43 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 343 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MVELEIVWLV RGAWITVWIV SILPLVIASI PTSKLNSFRE LVLSFAGRGK ILHPSSQKFT IPQKCFAHFY VIGVVWTTLL LAATWMYACK MAPLSSEEFQ 101: LSDIASRLAG GSDVFSVHKS NMTPVEHRFK VWRAVFLLLL MEIHVLRRLI ESFYVFKYSP SARMHILGYF AGLFFYVTAP LSLCSNIAPE VAGFVGNQVA 201: EFIANGKSHT SAPEFNLLSS ISPLMKLGSL QWIGGAIFLW GWIHQRRCHA ILGSLRENPS QAKEYIIPYG DWFGMVSSPH FLAEIVLYAG LLIASGGTDI 301: TIWLLFGFVA ANLTYAAGET HRWYLRKFEN YPANRHAIFP YVY |
||||||||||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)