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AT2G16530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : 3-oxo-5-alpha-steroid 4-dehydrogenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
3-oxo-5-alpha-steroid 4-dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors, 3-oxo-5-alpha-steroid 4-dehydrogenase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal (InterPro:IPR001104); BEST Arabidopsis thaliana protein match is: 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (TAIR:AT1G72590.1); Has 1047 Blast hits to 1045 proteins in 211 species: Archae - 0; Bacteria - 24; Metazoa - 384; Fungi - 161; Plants - 181; Viruses - 0; Other Eukaryotes - 297 (source: NCBI BLink).
Protein Annotations
BioGrid:1510EC:1.3.1.94eggNOG:ENOG4111JQMeggNOG:KOG1640
EMBL:AC007195EMBL:AY052296EMBL:BT002716EMBL:BX819600
EMBL:CP002685EnsemblPlants:AT2G16530EnsemblPlants:AT2G16530.1entrez:816152
GeneID:816152Genevisible:Q9SI62GO:GO:0005783GO:GO:0005789
GO:GO:0005794GO:GO:0006486GO:GO:0006629GO:GO:0016021
GO:GO:0016627hmmpanther:PTHR14624HOGENOM:HOG000240963InParanoid:Q9SI62
InterPro:IPR001104iPTMnet:Q9SI62KEGG:ath:AT2G16530KO:K12345
OMA:VELEIVWPaxDb:Q9SI62Pfam:PF02544Pfam:Q9SI62
Pfscan:PS50244PhylomeDB:Q9SI62PIR:D84541PRIDE:Q9SI62
PRO:PR:Q9SI62PROSITE:PS50244ProteinModelPortal:Q9SI62Proteomes:UP000006548
Reactome:R-ATH-193048Reactome:R-ATH-446199RefSeq:NP_565389.1RefSeq:NP_973474.1
STRING:3702.AT2G16530.1TAIR:AT2G16530TMHMM:TMhelixUniGene:At.14490
UniGene:At.48730UniPathway:UPA00378UniProt:Q9SI62
Coordinates (TAIR10) chr2:-:7163276..7165064
Molecular Weight (calculated) 38680.40 Da
IEP (calculated) 9.37
GRAVY (calculated) 0.43
Length 343 amino acids
Sequence (TAIR10)
(BLAST)
001: MVELEIVWLV RGAWITVWIV SILPLVIASI PTSKLNSFRE LVLSFAGRGK ILHPSSQKFT IPQKCFAHFY VIGVVWTTLL LAATWMYACK MAPLSSEEFQ
101: LSDIASRLAG GSDVFSVHKS NMTPVEHRFK VWRAVFLLLL MEIHVLRRLI ESFYVFKYSP SARMHILGYF AGLFFYVTAP LSLCSNIAPE VAGFVGNQVA
201: EFIANGKSHT SAPEFNLLSS ISPLMKLGSL QWIGGAIFLW GWIHQRRCHA ILGSLRENPS QAKEYIIPYG DWFGMVSSPH FLAEIVLYAG LLIASGGTDI
301: TIWLLFGFVA ANLTYAAGET HRWYLRKFEN YPANRHAIFP YVY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)